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Article Dans Une Revue Journal of Computational Biology Année : 2010

Combinatorial structure of genome

Anne Bergeron
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Résumé

In genome rearrangement theory, one of the elusive questions raised in recent years is the enumeration of rearrangement scenarios between two genomes. This problem is related to the uniform generation of rearrangement scenarios and the derivation of tests of statistical significance of the properties of these scenarios. Here we give an exact formula for the number of double-cut-and-join (DCJ) rearrangement scenarios between two genomes. We also construct effective bijections between the set of scenarios that sort a component as well studied combinatorial objects such as parking functions, labeled trees, and prüfer codes.
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Dates et versions

hal-00527626 , version 1 (19-10-2010)

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Aïda Ouangraoua, Anne Bergeron. Combinatorial structure of genome: Rearrangements scenarios. Journal of Computational Biology, 2010, 17 (9), ⟨10.1089/cmb.2010.0126⟩. ⟨hal-00527626⟩
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