Protein Threading

Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat

inria-00412642, version 1

Protein Threading

Guillaume Collet^a^, 1, Rumen Andonov ()^a^, 1, Nicola Yanev ()^b^, 1, Jean-François Gibrat^c^, 2

8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (2009)

Résumé : This paper describes a new algorithm that expands upon algorithms proposed in previous works to allow implementation of local sequence – structure alignments for the protein threading problem. This allows threading methods to cover the whole spectrum of alignment types needed to analyze homologous proteins.

a – Université Rennes I
b – Sofia University
c – INRA
1 : SYMBIOSE (INRIA - IRISA)
CNRS : UMR6074 – INRIA – Institut National des Sciences Appliquées (INSA) - Rennes – Université de Rennes 1
2 : Unité Mathématique Informatique et Génome (MIG)
Institut national de la recherche agronomique (INRA)

inria-00412642, version 1
http://hal.inria.fr/inria-00412642
oai:hal.inria.fr:inria-00412642
Contributeur : Guillaume Collet <>
Soumis le : Mercredi 2 Septembre 2009, 13:11:53
Dernière modification le : Mercredi 2 Septembre 2009, 13:34:44

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