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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell. Berthoumieux S., De Jong H., Baptist G., Pinel C., Ranquet C., Ropers D., Geiselmann J. Molecular Systems Biology 9, 1 (2013) 634 [hal-00793352 - version 1]

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli Baldazzi V., Ropers D., Geiselmann J., Kahn D., De Jong H. Journal of Theoretical Biology 295 (2012) 100-115 [hal-00762570 - version 1]

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli Baldazzi V., Ropers D., Geiselmann H., Kahn D., Jong H. De Journal of Theoretical Biology 295 (2012) [hal-00793061 - version 1]

Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks Batt G., Besson B., Ciron P.-E., De Jong H., Dumas E., Geiselmann J., Monte R., Monteiro P. T., Page M., Rechenmann F. et al Dans Bacterial Molecular Networks Methods and Protocols, Springer (Ed.) (2012) 439-462 [hal-00762122 - version 1]

Importance of Metabolic Coupling for the Dynamics of Gene Expression Following a Diauxic Shift in E. coli Baldazzi V., Ropers D., Geiselmann J., Kahn D., De Jong H. N° RR-7617 (2011) [inria-00593109 - version 1]

Qualitative analysis of genetic regulatory networks in bacteria Baldazzi V., Monteiro P. T., Page M., Ropers D., Geiselmann H., Jong H. De Dans Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology, Springer (Ed.) (2011) 111-130 [hal-00793038 - version 1]

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in E. coli Baldazzi V., Ropers D., Geiselmann H., Kahn D., Jong H. De Dans Proceedings of the 18th IFAC World Congress (2011) 14851-14856 [hal-00793037 - version 1]

Qualitative modelling and formal verification of the FLR1 gene mancozeb response in Saccharomyces cerevisiae Monteiro P. T., Dias P.J., Ropers D., Oliveira A.L., Sa-Correia I., Teixeira M.C., Freitas A. T. Iet Systems Biology 5 (2011) 308-316 [hal-00793036 - version 1]

Model reduction using piecewise-linear approximations preserves dynamic properties of the carbon starvation response in Escherichia coli Ropers D., Baldazzi V., Jong H. De IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (2011) 166-181 [hal-00793034 - version 1]

De la complexité génomique à la diversité protéique : Analyse par modélisation et expériences de la régulation de l'épissage alternatif de lÁRN du virus VIH-1 Ropers D. Editions Universitaires Européennes (Ed.) (2011) 288 [hal-00793035 - version 1]