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Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data Välimäki N., Rivals E. Dans ISBRA'2013: International Symposium on Bioinformatics Research and Applications 7875 (2013) 237-248 [lirmm-00806103 - version 1]

Identification of biological models from single-cell data: a comparison between mixed-effects and moment-based inference Gonzalez A. M., Uhlendorf J., Schaul J., Cinquemani E., Batt G., Ferrari-Trecate G. N° RR-8288 (2013) [hal-00817582 - version 1]

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks. Lim N., Senbabaoglu Y., Michailidis G., D'Alché-Buc F. Bioinformatics (2013) (to appear) [hal-00819024 - version 1]

A network model of the periodic synchronization process in the dynamics of calcium concentration in GnRH neurons. Krupa M., Vidal A., Clément F. The Journal of Mathematical Neuroscience 3, 4 (2013) - [hal-00818160 - version 1]

Reconciliation and local gene tree rearrangement can be of mutual profit Nguyen T. H., Ranwez V., Pointet S., Arigon Chifolleau A.-M., Doyon J.-P., Berry V. Algorithms for Molecular Biology 8, 12 (2013) 39 [lirmm-00812726 - version 1]

De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateurs Berry H., Beslon G. Dans Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, Editions Matériologiques, Paris (Ed.) (2013) [hal-00815550 - version 1]

CRAC: an integrated approach to the analysis of RNA-seq reads Philippe N., Salson M., Commes T., Rivals E. Genome Biology (2013) 14:R30 [hal-00805905 - version 1]

Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows Bernard E., Jacob L., Mairal J., Vert J.-P. [hal-00803134 - version 1]

Spécification d'exigences physico-physiologiques d'interaction homme-machine en ingénierie système Morel G., Dupont J.-M., Lieber R., Bouffaron F., Méry D., Mayer F., Marty J.-L. Génie logiciel Mars 2013, 104 (2013) 29-39 [hal-00805851 - version 1]

Stoichiometry Determination for Mass-spectrometry Data: the Interval Case Agarwal D., Cazals F., Malod-Dognin N. N° RR-8101 (2013) [hal-00741491 - version 3]