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hal-00715252, version 1

Damaris: How to Efficiently Leverage Multicore Parallelism to Achieve Scalable, Jitter-free I/O

Matthieu Dorier (, http://people.irisa.fr/Matthieu.Dorier) 1, Gabriel Antoniu () a1, Franck Cappello () 23, Marc Snir b45, Leigh Orf () 6

CLUSTER - IEEE International Conference on Cluster Computing (2012)

Abstract: With exascale computing on the horizon, the performance variability of I/O systems represents a key challenge in sustaining high performance. In many HPC applications, I/O is concurrently performed by all processes, which leads to I/O bursts. This causes resource contention and substantial variability of I/O performance, which significantly impacts the overall application performance and, most importantly, its predictability over time. In this paper, we propose a new approach to I/O, called Damaris, which leverages dedicated I/O cores on each multicore SMP node, along with the use of shared-memory, to efficiently perform asynchronous data processing and I/O in order to hide this variability. We evaluate our approach on three different platforms including the Kraken Cray XT5 supercomputer (ranked 11th in Top500), with the CM1 atmospheric model, one of the target HPC applications for the Blue Waters postpetascale supercomputer project. By overlapping I/O with computation and by gathering data into large files while avoiding synchronization between cores, our solution brings several benefits: 1) it fully hides jitter as well as all I/O-related costs, which makes simulation performance predictable; 2) it increases the sustained write throughput by a factor of 15 compared to standard approaches; 3) it allows almost perfect scalability of the simulation up to over 9,000 cores, as opposed to state-of-the-art approaches which fail to scale; 4) it enables a 600\% compression ratio without any additional overhead, leading to a major reduction of storage requirements.

  • a –  INRIA
  • b –  University Of Illinois at Urbana Champaign
  • 1:  KerData (INRIA - IRISA)
  • INRIA – CNRS : UMR6074 – École normale supérieure de Cachan - ENS Cachan – Institut National des Sciences Appliquées (INSA) - Rennes – Université de Rennes 1
  • 2:  Joint Laboratory for Petascale Computing [Illinois] (JLPC)
  • University of Illinois at Urbana-Champaign – INRIA
  • 3:  GRAND-LARGE (INRIA Saclay - Ile de France)
  • INRIA – CNRS : UMR8623 – Université Paris XI - Paris Sud
  • 4:  Department of Computer Science [UIUC] (UIUC)
  • University of Illinois at Urbana-Champaign
  • 5:  Argonne National Laboratory (ANL)
  • US Department of Energy – University of Chicago
  • 6:  Department of Earth and Atmospheric Sciences [Michigan]
  • Central Michigan University
  • Collaboration : Joint INRIA/UIUC Laboratory for Petascale Computing, Grid'5000
  • Domain : Computer Science/Networking and Telecommunication
 
  • hal-00715252, version 1
  • oai:hal.inria.fr:hal-00715252
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  • Submitted on: Friday, 6 July 2012 15:30:06
  • Updated on: Thursday, 6 September 2012 11:57:23