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inria-00616193, version 1

Using spatial prior knowledge in the spectral fitting of MRS images

B. Michael Kelm 12, Frederik O. Kaster 13, A. Henning 4, Marc-André Weber 35, P. Bachert 3, P. Boesiger 4, Fred A. Hamprecht 1, Bjoern H. Menze 6

NMR in Biomedicine 25, 1 (2012) 1-13

Abstract: We propose a Bayesian smoothness prior in the spectral fitting of MRS images which can be used in addition to commonly employed prior knowledge. By combining a frequency-domain model for the free induction decay with a Gaussian Markov random field prior, a new optimization objective is derived that encourages smooth parameter maps. Using a particular parameterization of the prior, smooth damping, frequency and phase maps can be obtained whilst preserving sharp spatial features in the amplitude map. A Monte Carlo study based on two sets of simulated data demonstrates that the variance of the estimated parameter maps can be reduced considerably, even below the Cramér-Rao lower bound, when using spatial prior knowledge. Long-TE 1H MRSI at 1.5 T of a patient with a brain tumor shows that the use of the spatial prior resolves the overlapping peaks of choline and creatine when a single voxel method fails to do so. Improved and detailed metabolic maps can be derived from high-spatial-resolution, short-TE 1H MRSI at 3 T. Finally, the evaluation of four series of long-TE brain MRSI data with various signal-to-noise ratios shows the general benefit of the proposed approach.

  • 1:  Interdisciplinary Center for Scientific Computing (IWR)
  • University of Heidelberg
  • 2:  Corporate technology Siemens
  • Siemens
  • 3:  Division of Medical Physics in Radiology [Heidelberg]
  • German Cancer Research Center (DKFZ), Heidelberg
  • 4:  Institute for Biomedical Engineering [ETH Zurich]
  • University and ETH of Zurich
  • 5:  Diagnostic and Interventional Radiology [Heidelberg]
  • University Hospital, Heidelberg
  • 6:  ASCLEPIOS (INRIA Sophia Antipolis)
  • INRIA
  • Domain : Computer Science/Medical Imaging
    Computer Science/Modeling and Simulation
    Life Sciences/Bioengineering/Imaging
    Engineering Sciences/Signal and Image processing
    Computer Science/Signal and Image Processing
 
  • inria-00616193, version 1
  • oai:hal.inria.fr:inria-00616193
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  • Submitted on: Friday, 19 August 2011 19:57:02
  • Updated on: Wednesday, 4 July 2012 13:43:40