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inserm-00663665, version 1

Impact of receptor clustering on ligand binding.

Bertrand Caré (Author to contact preferably) 123, Hédi Soula (Author to contact preferably) 13

BMC Systems Biology 5, 1 (2011) 48

Abstract: BACKGROUND: Cellular response to changes in the concentration of different chemical species in the extracellular medium is induced by ligand binding to dedicated transmembrane receptors. Receptor density, distribution, and clustering may be key spatial features that influence effective and proper physical and biochemical cellular responses to many regulatory signals. Classical equations describing this kind of binding kinetics assume the distributions of interacting species to be homogeneous, neglecting by doing so the impact of clustering. As there is experimental evidence that receptors tend to group in clusters inside membrane domains, we investigated the effects of receptor clustering on cellular receptor ligand binding. RESULTS: We implemented a model of receptor binding using a Monte-Carlo algorithm to simulate ligand diffusion and binding. In some simple cases, analytic solutions for binding equilibrium of ligand on clusters of receptors are provided, and supported by simulation results. Our simulations show that the so-called "apparent" affinity of the ligand for the receptor decreases with clustering although the microscopic affinity remains constant. CONCLUSIONS: Changing membrane receptors clustering could be a simple mechanism that allows cells to change and adapt its affinity/sensitivity toward a given stimulus.

  • 1:  BEAGLE (Insa Lyon / INRIA Grenoble Rhône-Alpes / UCBL)
  • INRIA – Institut National des Sciences Appliquées (INSA) - Lyon – Université Claude Bernard - Lyon I
  • 2:  Laboratoire d'InfoRmatique en Images et Systèmes d'Information (LIRIS)
  • CNRS : UMR5205 – Université Claude Bernard - Lyon I – Université Lumière - Lyon II – Institut National des Sciences Appliquées (INSA) - Lyon – Ecole Centrale de Lyon
  • 3:  Laboratoire de recherche en cardiovasculaire, métabolisme, diabétologie et nutrition (CARMEN)
  • INSERM : U1060 – Institut national de la recherche agronomique (INRA) – Institut National des Sciences Appliquées (INSA) - Lyon – Université Claude Bernard - Lyon I – Hospices Civils de Lyon
  • Domain : Life Sciences/Biochemistry, Molecular Biology/Genomics
    Life Sciences/Quantitative Methods
    Computer Science/Bioinformatics
 
  • inserm-00663665, version 1
  • oai:www.hal.inserm.fr:inserm-00663665
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  • Submitted on: Friday, 27 January 2012 14:02:28
  • Updated on: Wednesday, 7 March 2012 15:47:06