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GPU-powered tools boost molecular visualization. Chavent M., Lévy B., Krone M., Bidmon K., Nominé J.-P., Ertl T., Baaden M. Briefings in Bioinformatics 12, 6 (2011) 689-701 [hal-00645161 - version 1]

Graphite-MicroMégas, a tool for DNA modeling Hornus S., Larivière D. Dans Journée Visu 2011 (2011) [hal-00756029 - version 1]

GPU-accelerated atom and dynamic bond visualization using hyperballs: a unified algorithm for balls, sticks, and hyperboloids. Chavent M., Vanel A., Tek A., Levy B., Robert S., Raffin B., Baaden M. Journal of Computational Chemistry 32, 13 (2011) 2924-35 [hal-00645162 - version 1]

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology. Fleishman S. J., Whitehead T. A., Strauch E.-M., Corn J. E., Qin S., Zhou H.-X., Mitchell J. C., Demerdash O. N. A., Takeda-Shitaka M., Terashi G. et al Journal of Molecular Biology (2011) in press [inria-00637848 - version 1]

A collaborative filtering approach for protein-protein docking scoring functions. Bourquard T., Bernauer J., Azé J., Poupon A. PLoS ONE 6, 4 (2011) e18541 [inria-00625000 - version 1]

3D-blast: 3D protein structure alignment, comparison, and classification using spherical polar Fourier correlations Mavridis L., Ritchie D. Dans Pacific Symposium on Biocomputing 2010 (2010) 281-292 [inria-00434263 - version 1]

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection Ferraresso S., Kuhl H., Milan M., Ritchie D., Secombes C. J., Reinhardt R., Bargelloni L. Immunogenetics 61, 11-12 (2009) 773-788 [inria-00434259 - version 1]

Self assembly of peptides near or within membranes using coarse grained MD simulations Khalfa A., Treptow W., Maigret B., Tarek M. Chemical Physics 358, 1-2 (2009) 161-170 [inria-00435164 - version 1]

Analysis of c-Met Kinase Domain Complexes: A New Specific Catalytic Site Receptor Model for Defining Binding Modes of ATP-Competitive Ligands Asses Y., Leroux V., Tairi-Kellou S., Dono R., Maina F., Maigret B. Chemical Biology & Drug Design 74, 6 (2009) 560-570 [inria-00435159 - version 1]

A molecular modelling study to rationalize the regioselectivity in acylation of flavonoïd glycosides catalysed by Candida antartica lipase B De Oliveira E., Humeau C., Chebil L., Maia E., Dehez F., Maigret B., Ghoul M., Engasser J.-M. Journal of Molecular Catalysis B Enzymatic 59, 1-3 (2009) 96-105 [inria-00435075 - version 1]