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inria-00000885, version 1

Combinatorial search on graphs motivated by bioinformatics applications: a brief survey

Mathilde Bouvel, Vladimir Grebinski, Gregory Kucherov () 1

31st International Workshop on Graph-Theoretic Concepts in Computer Science - WG'2005 3787 (2005) 16-27

Abstract: The goal of this paper is to present a brief survey of a collection of methods and results from the area of combinatorial search \cite{aig,du-hwa} focusing on graph reconstruction using queries of different type. The study is motivated by applications to genome sequencing.

  • 1:  ADAGE (INRIA Lorraine - LORIA)
  • INRIA – CNRS : UMR7503 – Université Henri Poincaré - Nancy I – Université Nancy II – Institut National Polytechnique de Lorraine (INPL)
  • Domain : Computer Science/Data Structures and Algorithms
    Life Sciences/Biochemistry, Molecular Biology/Genomics
 
  • inria-00000885, version 1
  • oai:hal.inria.fr:inria-00000885
  • From: 
  • Submitted on: Wednesday, 30 November 2005 19:49:44
  • Updated on: Tuesday, 29 May 2007 15:29:03