Grid-enabling medical image analysis

Cécile Germain; Vincent Breton; Patrick Clarysse; Yann Gaudeau; Tristan Glatard; Emmanuel Jeannot; Yannick Legré; Charles Loomis; Johan Montagnat; Jean-Marie Moureaux; Angel Osorio; Xavier Pennec; Romain Texier

hal-00166971, version 1

Grid-enabling medical image analysis

Cécile Germain ¹, Vincent Breton ², Patrick Clarysse ³, Yann Gaudeau ⁴, Tristan Glatard ³, Emmanuel Jeannot ⁵, Yannick Legré ¹, Charles Loomis ⁶, Johan Montagnat ⁷, Jean-Marie Moureaux ⁴, Angel Osorio ⁸, Xavier Pennec () ⁹, Romain Texier ¹

Cluster Computing and Grid 2005 (CCGrid05) Bio-Medical Computations on the Grid (Bio-Grid) 19 (2005) 339-349

Résumé : Grids have emerged as a promising technology to handle the data and compute intensive requirements of many application areas. Digital medical image processing is a promising application area for grids. Given the volume of data, the sensitivity of medical information, and the joint complexity of medical datasets and computations expected in clinical practice, the challenge is to fill the gap between the grid middleware and the requirements of clinical applications. The research project AGIR (Grid Analysis of Radiological Data) presented in this paper addresses this challenge through a combined approach: on one hand, leveraging the grid middleware through core grid medical services which target the requirements of medical data processing applications; on the other hand, grid-enabling a panel of applications ranging from algorithmic research to clinical applications.

1 : Laboratoire de Recherche en Informatique (LRI)
CNRS : UMR8623 – Université Paris XI - Paris Sud
2 : Laboratoire de Physique Corpusculaire de Clermont-Ferrand (LPC-CLERMONT)
CNRS : UMR6533 – IN2P3 – Université Blaise Pascal - Clermont-Ferrand II
3 : Centre de recherche et d'applications en traitement de l'image et du signal (CREATIS)
INSERM : U630 – Université Claude Bernard - Lyon I – Institut National des Sciences Appliquées (INSA) - Lyon – École Supérieure Chimie Physique Électronique de Lyon – CNRS : UMR5515
4 : Centre de recherche en automatique de Nancy (CRAN)
CNRS : UMR7039 – Université Henri Poincaré - Nancy I – Institut National Polytechnique de Lorraine (INPL)
5 : ALGORILLE (INRIA Lorraine - LORIA)
INRIA – CNRS : UMR7503 – Université Henri Poincaré - Nancy I – Université Nancy II – Institut National Polytechnique de Lorraine (INPL)
6 : Laboratoire de l'Accélérateur Linéaire (LAL)
CNRS : UMR8607 – IN2P3 – Université Paris XI - Paris Sud
7 : Laboratoire d'Informatique, Signaux, et Systèmes de Sophia-Antipolis (I3S)
Université Nice Sophia Antipolis [UNS] – CNRS : UMR7271
8 : Laboratoire d'Informatique pour la Mécanique et les Sciences de l'Ingénieur [Orsay] (LIMSI)
CNRS : UPR3251 – Université Pierre et Marie Curie [UPMC] - Paris VI – Université Paris XI - Paris Sud
9 : EPIDAURE (INRIA Sophia Antipolis)
INRIA

Collaboration : AGIR - Grid'5000

hal-00166971, version 1
http://hal.archives-ouvertes.fr/hal-00166971
oai:hal.archives-ouvertes.fr:hal-00166971
Contributeur : Jean-Marie Moureaux <>
Soumis le : Lundi 13 Août 2007, 21:51:13
Dernière modification le : Mardi 24 Avril 2012, 09:22:43

Voir la fiche détaillée

Documents associés

PDF :

DOI : 10.1007/s10877-005-0679-9

Exporter

Bibtex EndNote TEI RefWorks

%% hal-00166971, version 1
%% http://hal.archives-ouvertes.fr/hal-00166971
@inproceedings{germain:hal-00166971,
    hal_id = {hal-00166971},
    url = {http://hal.archives-ouvertes.fr/hal-00166971},
    title = {{Grid-enabling medical image analysis}},
    author = {Germain, C{\'e}cile and Breton, Vincent and Clarysse, Patrick and Gaudeau, Yann and Glatard, Tristan and Jeannot, Emmanuel and Legr{\'e}, Yannick and Loomis, Charles and Montagnat, Johan and Moureaux, Jean-Marie and Osorio, Angel and Pennec, Xavier and Texier, Romain},
    abstract = {{Grids have emerged as a promising technology to handle the data and compute intensive requirements of many application areas. Digital medical image processing is a promising application area for grids. Given the volume of data, the sensitivity of medical information, and the joint complexity of medical datasets and computations expected in clinical practice, the challenge is to fill the gap between the grid middleware and the requirements of clinical applications. The research project AGIR (Grid Analysis of Radiological Data) presented in this paper addresses this challenge through a combined approach: on one hand, leveraging the grid middleware through core grid medical services which target the requirements of medical data processing applications; on the other hand, grid-enabling a panel of applications ranging from algorithmic research to clinical applications.}},
    keywords = {Grid computing; medical image analysis},
    language = {Anglais},
    affiliation = {Laboratoire de Recherche en Informatique - LRI , Laboratoire de Physique Corpusculaire de Clermont-Ferrand - LPC-CLERMONT , Centre de recherche et d'applications en traitement de l'image et du signal - CREATIS , Centre de recherche en automatique de Nancy - CRAN , ALGORILLE - INRIA Lorraine - LORIA , Laboratoire de l'Acc{\'e}l{\'e}rateur Lin{\'e}aire - LAL , Laboratoire d'Informatique, Signaux, et Syst{\`e}mes de Sophia-Antipolis - I3S , Laboratoire d'Informatique pour la M{\'e}canique et les Sciences de l'Ing{\'e}nieur [Orsay] - LIMSI , EPIDAURE - INRIA Sophia Antipolis},
    booktitle = {{Journal of Clinical Monitoring and Computing}},
    publisher = {Springer Netherlands},
    pages = {339-349},
    address = {Cardiff, Royaume-Uni},
    volume = {19},
    number = {4/5 },
    audience = {internationale },
    collaboration = {AGIR - Grid'5000 },
    doi = {10.1007/s10877-005-0679-9 },
    year = {2005},
    month = Dec,
    pdf = {http://hal.archives-ouvertes.fr/hal-00166971/PDF/agirBiogrid3.pdf},
}

%F hal-00166971, version 1
%0 Conference Proceedings
%U http://hal.archives-ouvertes.fr/hal-00166971
%2 SPI:AUTO;INFO:INFO_DC
%T Grid-enabling medical image analysis
%A Germain, Cécile
%A Breton, Vincent
%A Clarysse, Patrick
%A Gaudeau, Yann
%A Glatard, Tristan
%A Jeannot, Emmanuel
%A Legré, Yannick
%A Loomis, Charles
%A Montagnat, Johan
%A Moureaux, Jean-Marie
%A Osorio, Angel
%A Pennec, Xavier
%A Texier, Romain
%+ Laboratoire de Recherche en Informatique - LRI , Laboratoire de Physique Corpusculaire de Clermont-Ferrand - LPC-CLERMONT , Centre de recherche et d'applications en traitement de l'image et du signal - CREATIS , Centre de recherche en automatique de Nancy - CRAN , ALGORILLE - INRIA Lorraine - LORIA , Laboratoire de l'Accélérateur Linéaire - LAL , Laboratoire d'Informatique, Signaux, et Systèmes de Sophia-Antipolis - I3S , Laboratoire d'Informatique pour la Mécanique et les Sciences de l'Ingénieur [Orsay] - LIMSI , EPIDAURE - INRIA Sophia Antipolis
%X Grids have emerged as a promising technology to handle the data and compute intensive requirements of many application areas. Digital medical image processing is a promising application area for grids. Given the volume of data, the sensitivity of medical information, and the joint complexity of medical datasets and computations expected in clinical practice, the challenge is to fill the gap between the grid middleware and the requirements of clinical applications. The research project AGIR (Grid Analysis of Radiological Data) presented in this paper addresses this challenge through a combined approach: on one hand, leveraging the grid middleware through core grid medical services which target the requirements of medical data processing applications; on the other hand, grid-enabling a panel of applications ranging from algorithmic research to clinical applications.
%G Anglais
%R 10.1007/s10877-005-0679-9
%B Journal of Clinical Monitoring and Computing
%2 internationale
%8 2005-12-03
%V 19
%N 4/5
%P 339-349
%I Springer Netherlands
%B Cluster Computing and Grid 2005 (CCGrid05) Bio-Medical Computations on the Grid (Bio-Grid)
%8 2005-05-09
%2 Cardiff
%2 Royaume-Uni
%K Grid computing; medical image analysis
%Z AGIR - Grid'5000

<?xml version="1.0" encoding="UTF-8"?>
<listBibl xmlns="http://www.tei-c.org/ns/1.0" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML">
<listBibl type="inproceedings"><head>Communications avec actes</head>
<biblStruct type="inproceedings" xml:id="hal-00166971"><analytic>
<author><persName><forename>Cécile</forename><surname>Germain</surname></persName>
<affiliation>
<orgName type="laboratory">LRI</orgName>
<orgName type="team">Laboratoire de Recherche en Informatique</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR8623</orgName>
<orgName type="institution">Université Paris XI - Paris Sud</orgName>
</affiliation>
</author>
<author><persName><forename>Vincent</forename><surname>Breton</surname></persName>
<affiliation>
<orgName type="laboratory">LPC-CLERMONT</orgName>
<orgName type="team">Laboratoire de Physique Corpusculaire de Clermont-Ferrand</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR6533</orgName>
<orgName type="institution">IN2P3</orgName>
<orgName type="institution">Université Blaise Pascal - Clermont-Ferrand II</orgName>
</affiliation>
</author>
<author><persName><forename>Patrick</forename><surname>Clarysse</surname></persName>
<affiliation>
<orgName type="laboratory">CREATIS</orgName>
<orgName type="team">Centre de recherche et d'applications en traitement de l'image et du signal</orgName>
<country>FR</country>
<orgName type="institution">INSERM : U630</orgName>
<orgName type="institution">Université Claude Bernard - Lyon I</orgName>
<orgName type="institution">Institut National des Sciences Appliquées (INSA) - Lyon</orgName>
<orgName type="institution">École Supérieure Chimie Physique Électronique de Lyon</orgName>
<orgName type="institution">CNRS : UMR5515</orgName>
</affiliation>
</author>
<author><persName><forename>Yann</forename><surname>Gaudeau</surname></persName>
<affiliation>
<orgName type="laboratory">CRAN</orgName>
<orgName type="team">Centre de recherche en automatique de Nancy</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR7039</orgName>
<orgName type="institution">Université Henri Poincaré - Nancy I</orgName>
<orgName type="institution">Institut National Polytechnique de Lorraine (INPL)</orgName>
</affiliation>
</author>
<author><persName><forename>Tristan</forename><surname>Glatard</surname></persName>
<affiliation>
<orgName type="laboratory">CREATIS</orgName>
<orgName type="team">Centre de recherche et d'applications en traitement de l'image et du signal</orgName>
<country>FR</country>
<orgName type="institution">INSERM : U630</orgName>
<orgName type="institution">Université Claude Bernard - Lyon I</orgName>
<orgName type="institution">Institut National des Sciences Appliquées (INSA) - Lyon</orgName>
<orgName type="institution">École Supérieure Chimie Physique Électronique de Lyon</orgName>
<orgName type="institution">CNRS : UMR5515</orgName>
</affiliation>
</author>
<author><persName><forename>Emmanuel</forename><surname>Jeannot</surname></persName>
<affiliation>
<orgName type="laboratory">INRIA Lorraine - LORIA</orgName>
<orgName type="team">ALGORILLE</orgName>
<country>FR</country>
<orgName type="institution">INRIA</orgName>
<orgName type="institution">CNRS : UMR7503</orgName>
<orgName type="institution">Université Henri Poincaré - Nancy I</orgName>
<orgName type="institution">Université Nancy II</orgName>
<orgName type="institution">Institut National Polytechnique de Lorraine (INPL)</orgName>
</affiliation>
</author>
<author><persName><forename>Yannick</forename><surname>Legré</surname></persName>
<affiliation>
<orgName type="laboratory">LRI</orgName>
<orgName type="team">Laboratoire de Recherche en Informatique</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR8623</orgName>
<orgName type="institution">Université Paris XI - Paris Sud</orgName>
</affiliation>
</author>
<author><persName><forename>Charles</forename><surname>Loomis</surname></persName>
<affiliation>
<orgName type="laboratory">LAL</orgName>
<orgName type="team">Laboratoire de l'Accélérateur Linéaire</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR8607</orgName>
<orgName type="institution">IN2P3</orgName>
<orgName type="institution">Université Paris XI - Paris Sud</orgName>
</affiliation>
</author>
<author><persName><forename>Johan</forename><surname>Montagnat</surname></persName>
<affiliation>
<orgName type="laboratory">I3S</orgName>
<orgName type="team">Laboratoire d'Informatique, Signaux, et Systèmes de Sophia-Antipolis</orgName>
<country>FR</country>
<orgName type="institution">Université Nice Sophia Antipolis [UNS]</orgName>
<orgName type="institution">CNRS : UMR7271</orgName>
</affiliation>
</author>
<author><persName><forename>Jean-Marie</forename><surname>Moureaux</surname></persName>
<affiliation>
<orgName type="laboratory">CRAN</orgName>
<orgName type="team">Centre de recherche en automatique de Nancy</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR7039</orgName>
<orgName type="institution">Université Henri Poincaré - Nancy I</orgName>
<orgName type="institution">Institut National Polytechnique de Lorraine (INPL)</orgName>
</affiliation>
</author>
<author><persName><forename>Angel</forename><surname>Osorio</surname></persName>
<affiliation>
<orgName type="laboratory">LIMSI</orgName>
<orgName type="team">Laboratoire d'Informatique pour la Mécanique et les Sciences de l'Ingénieur [Orsay]</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UPR3251</orgName>
<orgName type="institution">Université Pierre et Marie Curie [UPMC] - Paris VI</orgName>
<orgName type="institution">Université Paris XI - Paris Sud</orgName>
</affiliation>
</author>
<author><persName><forename>Xavier</forename><surname>Pennec</surname></persName>
<affiliation>
<orgName type="laboratory">INRIA Sophia Antipolis</orgName>
<orgName type="team">EPIDAURE</orgName>
<country>FR</country>
<orgName type="institution">INRIA</orgName>
</affiliation>
</author>
<author><persName><forename>Romain</forename><surname>Texier</surname></persName>
<affiliation>
<orgName type="laboratory">LRI</orgName>
<orgName type="team">Laboratoire de Recherche en Informatique</orgName>
<country>FR</country>
<orgName type="institution">CNRS : UMR8623</orgName>
<orgName type="institution">Université Paris XI - Paris Sud</orgName>
</affiliation>
</author>
<title type="main" level="a">Grid-enabling medical image analysis</title></analytic><monogr><title level="m" type="main">Journal of Clinical Monitoring and Computing</title><meeting>Cluster Computing and Grid 2005 (CCGrid05) Bio-Medical Computations on the Grid (Bio-Grid)</meeting><imprint><publisher>Springer Netherlands</publisher><pubPlace><settlement>Cardiff</settlement><country>Royaume-Uni</country></pubPlace><biblScope type="publicationDate">2005-12-03</biblScope><biblScope type="vol">19</biblScope><biblScope type="issue">4/5</biblScope><biblScope type="pp">339-349</biblScope></imprint></monogr><idno type="doi">10.1007/s10877-005-0679-9</idno><idno type="HALid">http://hal.archives-ouvertes.fr/hal-00166971</idno><idno type="HALFile">http://hal.archives-ouvertes.fr/hal-00166971/PDF/agirBiogrid3.pdf</idno></biblStruct>
</listBibl>
</listBibl>