Intragenomic reiterations detection using hidden Markov models

Sébastien Hergalant; Bertrand Aigle; Bernard Decaris; Pierre Leblond; Jean-François Mari

inria-00100914, version 1

Intragenomic reiterations detection using hidden Markov models

Sébastien Hergalant ()^a^, 1, Bertrand Aigle, Bernard Decaris, Pierre Leblond, Jean-François Mari^b^, 1

10th International Conference on Intelligent Systems for Molecular Biology - ISMB 2002 (2002) 1 p

Résumé : We present a genomic data mining method in which the user describes a signal worked out by a second order HMM. This signal representing the probability to classify a nucleotidic residue or a group of residues in a particular state, allows the localization of repetitions in a complete bacterial genomic sequence.

a – LORIA-INRA-REGION
b – UNIVERSITE NANCY 2
1 : ORPAILLEUR (INRIA Lorraine - LORIA)
INRIA – CNRS : UMR7503 – Université Henri Poincaré - Nancy I – Université Nancy II – Institut National Polytechnique de Lorraine (INPL)

inria-00100914, version 1
http://hal.inria.fr/inria-00100914
oai:hal.inria.fr:inria-00100914
Contributeur : Publications Loria <>
Soumis le : Mardi 26 Septembre 2006, 14:52:52
Dernière modification le : Jeudi 28 Septembre 2006, 15:22:47

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