inria-00146362, version 2
Rewrite Rules and Strategies for Molecular Graphs
(2007)
Résumé : In this paper, we present a rewriting framework for modeling molecular complexes, biochemical reaction rules and generation of biochemical networks based on the representation of molecular complexes as a particular type of multigraphs with ports called molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus which allows defining at the same level transformation rules and strategies for modeling rule selection and application, in order to prototype network generation.
- a – INRIA
- b – CNRS
- 1 :
- INRIA – CNRS : UMR7503 – Université Henri Poincaré - Nancy I – Université Nancy II – Institut National Polytechnique de Lorraine (INPL)
- Domaine : Informatique/Calcul formel
- Mots-clés : term rewriting – strategic rewriting – molecular complex – molecular graph – graph transformation
- Versions disponibles : v1 (14-05-2007) v2 (04-07-2007) v3 (12-11-2007)
- inria-00146362, version 2
- http://hal.inria.fr/inria-00146362
- oai:hal.inria.fr:inria-00146362
- Contributeur :
- Soumis le : Mardi 3 Juillet 2007, 23:55:55
- Dernière modification le : Mercredi 4 Juillet 2007, 15:12:33
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