Graph Rewriting and Strategies for Modeling Biochemical Networks

Oana Andrei; Hélène Kirchner

inria-00146362, version 3

Graph Rewriting and Strategies for Modeling Biochemical Networks

Oana Andrei ()^a^, 1, Hélène Kirchner^a^, 1

International Workshop on Natural Computing and Applications - NCA 2007 (2007)

Résumé : In this paper, we present a rewriting framework for modeling molecular complexes, biochemical reaction rules, and generation of biochemical networks based on the representation of molecular complexes as a particular type of multigraphs with ports called molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus which allows defining at the same level transformation rules and strategies for modeling rule selection and application, in order to prototype network generation.

a – INRIA
1 : PROTHEO (INRIA Lorraine - LORIA)
INRIA – CNRS : UMR7503 – Université Henri Poincaré - Nancy I – Université Nancy II – Institut National Polytechnique de Lorraine (INPL)

inria-00146362, version 3
http://hal.inria.fr/inria-00146362
oai:hal.inria.fr:inria-00146362
Contributeur : Oana Andrei <>
Soumis le : Lundi 12 Novembre 2007, 11:50:04
Dernière modification le : Lundi 12 Novembre 2007, 14:25:59

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