Survey of C-based application mapping tools for reconfigurable computing, Proceedings of the 8th International Conference on Military and Aerospace Programmable Logic Devices, 2005. ,
Accelerating Computation with Field-Programmable Gate Arrays, Reconfigurable Computing ch. 9, 2005. ,
Practical FPGA Programming in C, 2005. ,
C-Based Design Methodology for FPGA Implementation of ClustalW MSA, PRIB 2007, pp.11-18, 2007. ,
DOI : 10.1007/978-3-540-75286-8_2
Multiple Sequence Alignment on an FPGA, 11th International Conference on Parallel and Distributed Systems (ICPADS'05), pp.326-330, 2005. ,
DOI : 10.1109/ICPADS.2005.202
Smith-Waterman implementation on a FSB-FPGA module using the Intel Accelerator Abstraction Layer, 2009 IEEE International Symposium on Parallel & Distributed Processing, pp.1-4, 2009. ,
DOI : 10.1109/IPDPS.2009.5161214
Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform, Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications held in conjunction with SC07, HPRCTA '07, pp.39-48, 2007. ,
DOI : 10.1145/1328554.1328565
An Optimized System for Multiple Sequence Alignment, 2009 International Conference on Reconfigurable Computing and FPGAs, pp.178-182, 2009. ,
DOI : 10.1109/ReConFig.2009.82
Striped Smith-Waterman speeds database searches six times over other SIMD implementations, Bioinformatics, vol.23, issue.2, p.15661, 2007. ,
DOI : 10.1093/bioinformatics/btl582