RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA

Abstract : The annotation of noncoding RNA genes remains a major bottleneck in genome sequencing projects. Most genome sequences released today still come with sets of tRNAs and rRNAs as the only annotated RNA elements, ignoring hundreds of other RNA families. We have developed a web environment that is dedicated to noncoding RNA (ncRNA) prediction, annotation, and analysis and allows users to run a variety of tools in an integrated and flexible manner. This environment offers complementary ncRNA gene finders and a set of tools for the comparison, visualization, editing, and export of ncRNA candidates. Predictions can be filtered according to a large set of characteristics. Based on this environment, we created a public website located at http://RNAspace.org. It accepts genomic sequences up to 5 Mb, which permits for an online annotation of a complete bacterial genome or a small eukaryotic chromosome. The project is hosted as a Source Forge project (http://rnaspace.sourceforge.net/).
Type de document :
Article dans une revue
RNA, Cold Spring Harbor Laboratory Press, 2011, 17, pp.1947-1956. 〈http://rnajournal.cshlp.org/content/17/11/1947.long〉
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https://hal.inria.fr/hal-00642716
Contributeur : Helene Touzet <>
Soumis le : vendredi 18 novembre 2011 - 15:48:38
Dernière modification le : jeudi 11 janvier 2018 - 06:23:37

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  • HAL Id : hal-00642716, version 1

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Helene Touzet, Marie-Josée Cros, Antoine De Monte, Mariette Jerome, Philippe Bardou, et al.. RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. RNA, Cold Spring Harbor Laboratory Press, 2011, 17, pp.1947-1956. 〈http://rnajournal.cshlp.org/content/17/11/1947.long〉. 〈hal-00642716〉

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