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CSA: Comprehensive comparison of pairwise protein structure alignments

Inken Wohlers 1, * Noël Malod-Dognin 2 Rumen Andonov 3 Gunnar W. Klau 1
* Corresponding author
2 ABS - Algorithms, Biology, Structure
CRISAM - Inria Sophia Antipolis - Méditerranée
3 GenScale - Scalable, Optimized and Parallel Algorithms for Genomics
Inria Rennes – Bretagne Atlantique , IRISA-D7 - GESTION DES DONNÉES ET DE LA CONNAISSANCE
Abstract : CSA is a web server for the comprehensive comparison of pairwise protein structure alignments. Its exact alignment engine computes either optimal, top-scoring alignments or heuristic alignments with quality guarantee for the inter-residue distance based scorings of contact map overlap, PAUL, DALI and MATRAS. These and additional, uploaded alignments are compared using a number of quality measures and intuitive visualizations. CSA brings new insight into the structural relationship of the protein pairs under investigation and is a valuable tool for studying structural similarities. It is available at http://csa.project.cwi.nl
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https://hal.inria.fr/hal-00667920
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Submitted on : Monday, February 13, 2012 - 8:56:42 AM
Last modification on : Thursday, December 19, 2019 - 1:36:14 AM
Long-term archiving on: : Thursday, November 22, 2012 - 12:10:24 PM

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  • HAL Id : hal-00667920, version 1
  • ARXIV : 1202.2670

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Inken Wohlers, Noël Malod-Dognin, Rumen Andonov, Gunnar W. Klau. CSA: Comprehensive comparison of pairwise protein structure alignments. Nucleic Acids Research, Oxford University Press, 2012, 40, pp.303-309. ⟨hal-00667920⟩

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