UniPathway: a resource for the exploration and annotation of metabolic pathways.

Abstract : UniPathway (http://www.unipathway.org) is a fully manually curated resource for the representation and annotation of metabolic pathways. UniPathway provides explicit representations of enzyme-catalyzed and spontaneous chemical reactions, as well as a hierarchical representation of metabolic pathways. This hierarchy uses linear subpathways as the basic building block for the assembly of larger and more complex pathways, including species-specific pathway variants. All of the pathway data in UniPathway has been extensively cross-linked to existing pathway resources such as KEGG and MetaCyc, as well as sequence resources such as the UniProt KnowledgeBase (UniProtKB), for which UniPathway provides a controlled vocabulary for pathway annotation. We introduce here the basic concepts underlying the UniPathway resource, with the aim of allowing users to fully exploit the information provided by UniPathway.
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https://hal.inria.fr/hal-00746856
Contributor : Marie-France Sagot <>
Submitted on : Monday, October 29, 2012 - 6:36:34 PM
Last modification on : Thursday, March 21, 2019 - 2:51:28 PM

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Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B Axelsen, Guillaume Keller, et al.. UniPathway: a resource for the exploration and annotation of metabolic pathways.. Nucleic Acids Research, Oxford University Press, 2012, 40 (D1), pp.D761-D769. ⟨10.1093/nar/gkr1023⟩. ⟨hal-00746856⟩

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