V. Acuña, F. Chierichetti, V. Lacroix, A. Marchetti-spaccamela, M. Sagot et al., Modes and cuts in metabolic networks: Complexity and algorithms, Biosystems, vol.95, issue.1, pp.51-60, 2009.
DOI : 10.1016/j.biosystems.2008.06.015

F. Centler, C. Kaleta, P. S. Di-fenizio, and P. Dittrich, Computing chemical organizations in biological networks, Bioinformatics, vol.24, issue.14, pp.1611-1618, 2008.
DOI : 10.1093/bioinformatics/btn228

L. Cottret, P. V. Milreu, V. Acuña, A. Marchetti-spaccamela, F. V. Martinez et al., Enumerating Precursor Sets of Target Metabolites in a Metabolic Network, Workshop on Algorithms in Bioinformatics (WABI'2008), pp.233-244, 2008.
DOI : 10.1007/978-3-540-87361-7_20

URL : https://hal.archives-ouvertes.fr/hal-00428200

P. Dittrich and P. S. Di-fenizio, Chemical Organisation Theory, Bulletin of Mathematical Biology, vol.96, issue.25, pp.1199-1231, 2007.
DOI : 10.1007/s11538-006-9130-8

G. Even, J. Naor, B. Schieber, and M. Sudan, Approximating Minimum Feedback Sets and Multicuts in Directed Graphs, Algorithmica, vol.20, issue.2, pp.151-174, 1998.
DOI : 10.1007/PL00009191

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.15.8967

W. Fontana and L. Buss, The Arrival of the fittest: towards a theory of biological organization, Bull. Math. Biol, vol.56, pp.1-64, 1994.

R. M. Karp, Reducibility among combinatorial problems, Complexity of Computer Computations, pp.85-103, 1972.
DOI : 10.1007/978-3-540-68279-0_8

V. Lacroix, L. Cottret, P. Thbault, and M. F. Sagot, An Introduction to Metabolic Networks and Their Structural Analysis, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.5, issue.4, pp.594-617, 2008.
DOI : 10.1109/TCBB.2008.79

URL : https://hal.archives-ouvertes.fr/hal-00355497

J. A. Papin, J. Stelling, N. D. Price, S. Klamt, S. Schuster et al., Comparison of network-based pathway analysis methods, Trends in Biotechnology, vol.22, issue.8, pp.400-405, 2004.
DOI : 10.1016/j.tibtech.2004.06.010

P. Romero and P. D. Karp, NUTRIENT-RELATED ANALYSIS OF PATHWAY/GENOME DATABASES, Biocomputing 2001, pp.470-482, 2001.
DOI : 10.1142/9789814447362_0046

S. Schuster, T. Dandekar, and D. A. , Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering, Trends in Biotechnology, vol.17, issue.2, pp.53-60, 1999.
DOI : 10.1016/S0167-7799(98)01290-6

S. Schuster and C. Hilgetag, ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE, Journal of Biological Systems, vol.02, issue.02, pp.165-182, 1994.
DOI : 10.1142/S0218339094000131

P. D. Seymour, Packing directed circuits fractionally, Combinatorica, vol.2, issue.2, pp.281-288, 1995.
DOI : 10.1007/BF01200760