Systems biology: parameter estimation for biochemical models, FEBS Journal, vol.7, issue.4, pp.886-902, 2009. ,
DOI : 10.1111/j.1742-4658.2008.06844.x
DAISY: A new software tool to test global identifiability of biological and physiological systems, Computer Methods and Programs in Biomedicine, vol.88, issue.1, pp.52-61, 2007. ,
DOI : 10.1016/j.cmpb.2007.07.002
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli, Nature Chemical Biology, vol.149, issue.8, pp.593-602, 2009. ,
DOI : 10.1038/nchembio.186
Identification of metabolic network models from incomplete high-throughput datasets, Bioinformatics, vol.27, issue.13, pp.186-195, 2011. ,
DOI : 10.1093/bioinformatics/btr225
URL : https://hal.archives-ouvertes.fr/hal-00793039
Structural and practical identifiability of approximate metabolic network models, Proc. 16th IFAC Symp. System Identif, 2012. ,
DOI : 10.3182/20120711-3-BE-2027.00166
URL : https://hal.archives-ouvertes.fr/hal-00762604
A Quantitative Approach to Catabolite Repression in Escherichia coli, Journal of Biological Chemistry, vol.281, issue.5, pp.2578-84, 2006. ,
DOI : 10.1074/jbc.M508090200
Incremental Singular Value Decomposition of Uncertain Data with Missing Values, Proc. 7th Eur. Conf. Comput. Vision, pp.707-727, 2002. ,
DOI : 10.1007/3-540-47969-4_47
Global identifiability of the parameters of nonlinear systems with specified inputs: A comparison of methods, Mathematical Biosciences, vol.102, issue.1, pp.41-73, 1990. ,
DOI : 10.1016/0025-5564(90)90055-4
Classic and contemporary approaches to modeling biochemical reactions, Genes & Development, vol.24, issue.17, pp.1861-75, 2010. ,
DOI : 10.1101/gad.1945410
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2932968
GenSSI: a software toolbox for structural identifiability analysis of biological models, Bioinformatics, vol.27, issue.18, pp.2610-2611, 2011. ,
DOI : 10.1093/bioinformatics/btr431
Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods, PLoS ONE, vol.6, issue.11, p.27755, 2011. ,
DOI : 10.1371/journal.pone.0027755.s001
Recent developments in parameter estimation and structure identification of biochemical and genomic systems, Mathematical Biosciences, vol.219, issue.2, pp.57-83, 2009. ,
DOI : 10.1016/j.mbs.2009.03.002
Parameter and structural identifiability concepts and ambiguities: A critical review and analysis, Am. J. Physiol, vol.239, issue.1, pp.7-24, 1980. ,
SYSTEM IDENTIFICATION CHALLENGES FROM SYSTEMS BIOLOGY, Proc. 14th IFAC Symp, pp.81-93, 2006. ,
DOI : 10.3182/20060329-3-AU-2901.00007
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review, Journal of Computational Biology, vol.9, issue.1, pp.67-103, 2002. ,
DOI : 10.1089/10665270252833208
Metabolic control analysis using transient metabolite concentrations. Determination of metabolite concentration control coefficients, Biochemical Journal, vol.285, issue.3, pp.965-72, 1992. ,
DOI : 10.1042/bj2850965
Universally Sloppy Parameter Sensitivities in Systems Biology Models, PLoS Computational Biology, vol.19, issue.10, p.189, 2007. ,
DOI : 10.1371/journal.pcbi.0030189.sd006
Topology of the global regulatory network of carbon limitation in Escherichia coli, Journal of Biotechnology, vol.132, issue.4, pp.359-374, 2007. ,
DOI : 10.1016/j.jbiotec.2007.08.029
Effects of spatiotemporal variations on metabolic control: Approximate analysis using (log)linear kinetic models, Biotechnology and Bioengineering, vol.252, issue.2, pp.91-104, 1997. ,
DOI : 10.1002/(SICI)1097-0290(19970420)54:2<91::AID-BIT1>3.0.CO;2-Q
Approximative kinetic formats used in metabolic network modeling, Biotechnology and Bioengineering, vol.271, issue.5, pp.534-579, 2005. ,
DOI : 10.1002/bit.20558
The Regulation of Cellular Systems, 1996. ,
DOI : 10.1007/978-1-4613-1161-4
Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations, Science, vol.316, issue.5824, pp.593-600, 2007. ,
DOI : 10.1126/science.1132067
Linking data to models: data regression, Nature Reviews Molecular Cell Biology, vol.91, issue.11, pp.813-822, 2006. ,
DOI : 10.1038/nrm2030
Principal Component Analysis, 1986. ,
DOI : 10.1007/978-1-4757-1904-8
Bacterial adaptation through distributed sensing of metabolic fluxes, Molecular Systems Biology, vol.73, p.355, 2010. ,
DOI : 10.1016/S1369-5274(03)00033-X
Bringing metabolic networks to life: Convenience rate law and thermodynamic constraints, Theoretical Biology and Medical Modelling, vol.3, issue.1, p.41, 2006. ,
DOI : 10.1186/1742-4682-3-41
System Identification, Theory for the User, 1999. ,
Dynamical modeling and multi-experiment fitting with PottersWheel, Bioinformatics, vol.24, issue.18, pp.2037-2080, 2008. ,
DOI : 10.1093/bioinformatics/btn350
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2530888
Structural identifiability of polynomial and rational systems, Mathematical Biosciences, vol.223, issue.2, pp.83-96, 2010. ,
DOI : 10.1016/j.mbs.2009.11.002
Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics, Metabolic Engineering, vol.11, issue.1, pp.20-30, 2009. ,
DOI : 10.1016/j.ymben.2008.07.004
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood, Bioinformatics, vol.25, issue.15, pp.1923-1952, 2009. ,
DOI : 10.1093/bioinformatics/btp358
Addressing parameter identifiability by model-based experimentation, IET Systems Biology, vol.5, issue.2, pp.120-150, 2011. ,
DOI : 10.1049/iet-syb.2010.0061
Metabolic control theory: A structural approach, Journal of Theoretical Biology, vol.135, issue.2, pp.175-201, 1988. ,
DOI : 10.1016/S0022-5193(88)80073-0
Flux-based estimation of parameters in S-systems, Ecological Modelling, vol.93, issue.1-3, pp.1-3, 1996. ,
DOI : 10.1016/0304-3800(95)00215-4
Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology, 1976. ,
Parameter identifiability of power-law biochemical system models, Journal of Biotechnology, vol.149, issue.3, pp.132-172, 2010. ,
DOI : 10.1016/j.jbiotec.2010.02.019
The Total Least Squares Problems: Computational Aspects and Analysis, 1991. ,
DOI : 10.1137/1.9781611971002
Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics, Metabolic Engineering, vol.5, issue.3, pp.164-76, 2003. ,
DOI : 10.1016/S1096-7176(03)00025-9
Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study, IEE Proceedings - Systems Biology, vol.153, issue.4, pp.286-98, 2006. ,
DOI : 10.1049/ip-syb:20050087
The intricate side of systems biology, Proc. Natl. Acad. Sci. USA 103, pp.9452-9459, 2006. ,
DOI : 10.1073/pnas.0603337103
Identification of Parametric Models, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-00252148