Computational Molecular Biology -An Algorithmic Approach ,
Reductive Genome Evolution from the Mother of Rickettsia, PLoS Genetics, vol.44, issue.1, pp.103-114, 2007. ,
DOI : 10.1371/journal.pgen.0030014.st005
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals, Journal of the ACM, vol.46, issue.1, pp.1-27, 1999. ,
DOI : 10.1145/300515.300516
Transforming men into mice (polynomial algorithm for genomic distance problem), Proceedings of IEEE 36th Annual Foundations of Computer Science, pp.581-592, 1995. ,
DOI : 10.1109/SFCS.1995.492588
Advances on Sorting by ReversalsA preliminary version appeared in CPM, Discrete Applied Mathematics Lecture Notes in Computer Science, vol.155, issue.3595, pp.6-7881, 2004. ,
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study, Journal of Computational Biology, vol.8, issue.5, pp.483-491, 2001. ,
DOI : 10.1089/106652701753216503
The inversion distance problem Mathematics of evolution and phylogeny, 2005. ,
Improving the Efficiency of Sorting by Reversals, Proceedings of The 2006 International Conference on Bioinformatics and Computational Biology CSREA Press, 2006. ,
A New Implementation and Detailed Study of Breakpoint Analysis, Biocomputing 2001, pp.583-594, 2001. ,
DOI : 10.1142/9789814447362_0056
GRIMM: genome rearrangements web server, Bioinformatics, vol.18, issue.3, pp.492-493, 2002. ,
DOI : 10.1093/bioinformatics/18.3.492
Evolution under Reversals: Parsimony and Conservation of Common Intervals, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.4, issue.2, pp.301-309, 2005. ,
DOI : 10.1109/TCBB.2007.1042
URL : https://hal.archives-ouvertes.fr/hal-00434588
Conserved structures in evolution scenarios, RCG Lecture Notes in Bioinformatics, vol.3388, pp.1-15, 2005. ,
Perfect Sorting by Reversals Is Not Always Difficult, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.4, issue.1, pp.4-16, 2007. ,
DOI : 10.1109/TCBB.2007.1011
URL : https://hal.archives-ouvertes.fr/lirmm-00111979
Common intervals and sorting by reversals: a marriage of necessity, Bioinformatics, vol.18, issue.Suppl 2, pp.54-63, 2002. ,
DOI : 10.1093/bioinformatics/18.suppl_2.S54
An Algorithm to Enumerate Sorting Reversals for Signed Permutations, Journal of Computational Biology, vol.10, issue.3-4, pp.575-597, 2003. ,
DOI : 10.1089/10665270360688200
On the properties of sequences of reversals that sort a signed permutation, pp.99-108, 2002. ,
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.5, issue.3, pp.348-356, 2007. ,
DOI : 10.1109/TCBB.2008.16
URL : https://hal.archives-ouvertes.fr/hal-00428206
Using median sets for inferring phylogenetic trees, Bioinformatics, vol.23, issue.2, pp.129-135, 2007. ,
DOI : 10.1093/bioinformatics/btl300
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions, BMC Bioinformatics, vol.9, issue.1, p.516, 2008. ,
DOI : 10.1186/1471-2105-9-516
The Reversal Median Problem, INFORMS Journal on Computing, vol.15, issue.1, pp.93-113, 2003. ,
DOI : 10.1287/ijoc.15.1.93.15155
Finding All Common Intervals of k Permutations, Combinatorial Pattern Matching, 12th Annual Symposium, pp.207-218, 2001. ,
DOI : 10.1007/3-540-48194-X_19
baobabLUNA: the solution space of sorting by reversals, Bioinformatics, vol.25, issue.14, pp.1833-1835, 2009. ,
DOI : 10.1093/bioinformatics/btp285
URL : https://hal.archives-ouvertes.fr/hal-00539408