R. Kiesslich, M. Goetz, M. Vieth, P. R. Galle, and M. F. Neurath, Confocal Laser Endomicroscopy, Confocal laser endomicroscopy, pp.715-731, 2005.
DOI : 10.1016/j.giec.2005.08.010

URL : https://hal.archives-ouvertes.fr/hal-00854321

M. Wallace and P. Fockens, Probe-Based Confocal Laser Endomicroscopy, Gastroenterology, vol.136, issue.5, pp.1509-1513, 2009.
DOI : 10.1053/j.gastro.2009.03.034

URL : https://hal.archives-ouvertes.fr/hal-00813813

S. Yun, G. Tearney, J. F. De-boer, N. Iftimia, and B. Bouma, High-speed optical frequency-domain imaging, Optics Express, vol.11, issue.22, pp.2953-2963, 2003.
DOI : 10.1364/OE.11.002953

G. J. Tearney, R. H. Webb, and B. E. Bouma, Spectrally encoded confocal microscopy, Optics Letters, vol.23, issue.15, pp.1152-1154, 1998.
DOI : 10.1364/OL.23.001152

T. D. Wang, M. J. Mandella, C. H. Contag, and G. S. Kino, Dual-axis confocal microscope for high-resolution in vivo imaging, Optics Letters, vol.28, issue.6, pp.414-416, 2003.
DOI : 10.1364/OL.28.000414

Y. S. Sabharwal, A. R. Rouse, L. Donaldson, M. F. Hopkins, and A. F. Gmitro, Slit-scanning confocal microendoscope for high-resolution in vivo imaging, Applied Optics, vol.38, issue.34, pp.7133-7144, 1999.
DOI : 10.1364/AO.38.007133

K. Sung, C. Liang, M. Descour, T. Collier, M. Follen et al., Fiber-optic confocal reflectance microscope with miniature objective for in vivo imaging of human tissues, IEEE Transactions on Biomedical Engineering, vol.49, issue.10, pp.1168-1172, 2002.
DOI : 10.1109/TBME.2002.803524

E. Laemmel, M. Genet, L. Goualher, G. Perchant, A. et al., Fibered Confocal Fluorescence Microscopy (Cell-viZio???) Facilitates Extended Imaging in the Field of Microcirculation, Journal of Vascular Research, vol.41, issue.5, pp.41-400, 2004.
DOI : 10.1159/000081209

A. A. Tanbakuchi, A. R. Rouse, J. A. Udovich, K. D. Hatch, and A. F. Gmitro, Clinical confocal microlaparoscope for real-time in vivo optical biopsies, Journal of Biomedical Optics, vol.14, issue.4, pp.44030-044030, 2009.
DOI : 10.1117/1.3207139

M. C. Pierce, R. A. Schwarz, V. S. Bhattar, S. Mondrik, M. D. Williams et al., Accuracy of In Vivo Multimodal Optical Imaging for Detection of Oral Neoplasia, Cancer Prevention Research, vol.5, issue.6, pp.801-809, 2012.
DOI : 10.1158/1940-6207.CAPR-11-0555

V. Becker, T. Vercauteren, C. H. Von-weyern, C. Prinz, R. M. Schmid et al., High-resolution miniprobe-based confocal microscopy in combination with video mosaicing (with video), Gastrointestinal Endoscopy, vol.66, issue.5, pp.1001-1007, 2007.
DOI : 10.1016/j.gie.2007.04.015

URL : https://hal.archives-ouvertes.fr/inria-00616022

L. Thiberville, S. Moreno-swirc, T. Vercauteren, E. Peltier, C. Cavé et al., Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy, American Journal of Respiratory and Critical Care Medicine, vol.175, issue.1, pp.22-31, 2007.
DOI : 10.1164/rccm.200605-684OC

URL : https://hal.archives-ouvertes.fr/inserm-00476448

B. A. Flusberg, E. D. Cocker, W. Piyawattanametha, J. C. Jung, E. L. Cheung et al., Fiber-optic fluorescence imaging, Nature Methods, vol.9, issue.12, pp.941-950, 2005.
DOI : 10.1038/nmeth820

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849801

L. Goualher, G. Perchant, A. Genet, M. Cavé, C. Viellerobe et al., Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope, Proc. MICCAI'04, pp.761-768, 2004.
DOI : 10.1007/978-3-540-30136-3_93

URL : https://hal.archives-ouvertes.fr/inria-00615981

A. Perchant, L. Goualher, G. Genet, M. Viellerobe, B. Berier et al., An integrated fibered confocal microscopy system for in vivo and in situ fluorescence imaging - applications to endoscopy in small animal imaging, 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821), pp.692-695, 2004.
DOI : 10.1109/ISBI.2004.1398632

A. Osdoit, M. Genet, A. Perchant, S. Loiseau, B. Abrat et al., In vivo fibered confocal reflectance imaging: totally non-invasive morphological cellular imaging brought to the endoscopist, Endoscopic Microscopy, pp.608208-608210, 2006.
DOI : 10.1117/12.646659

B. Viellerobe, A. Osdoit, C. Cavé, F. Lacombe, S. Loiseau et al., Mauna Kea technologies' F400 prototype: a new tool for in vivo microscopic imaging during endoscopy, Endoscopic Microscopy, p.SPIE, 2006.
DOI : 10.1117/12.646625

T. Vercauteren, N. Ayache, N. Savoire, G. Malandain, and A. Perchant, Processing of in vivo fibered confocal microscopy video sequences, " [Microscopic Image Analysis for Life Science, pp.978-979, 2008.

B. André, T. Vercauteren, A. M. Buchner, M. B. Wallace, and N. Ayache, A smart atlas for endomicroscopy using automated video retrieval, Medical Image Analysis, vol.15, issue.4, pp.460-476, 2011.
DOI : 10.1016/j.media.2011.02.003

F. Lacombe, O. Lavaste, and L. Senhadji, Diagnostic precoce du cancer du c??lon, IRBM, vol.32, issue.2, pp.83-86, 2011.
DOI : 10.1016/j.irbm.2011.01.029

G. Kennedy, H. Manning, D. Elson, M. Neil, G. Stamp et al., A fluorescence lifetime imaging scanning confocal endomicroscope, Journal of Biophotonics, vol.92, issue.1-2, pp.103-107, 2010.
DOI : 10.1002/jbio.200910065

D. Peyrot, C. Lefort, T. Mansuryan, S. Kruglik, N. Sandeau et al., Développement d'un endomicroscope non linéaire pour l'observation in vivo in situ de la matrice extracellulaire des tissus pulmonaires (development of a non-linear endomicroscope for the in vivo in situ observation of lung tissue extracellular matrix), pp.33-67, 2012.

Y. Kim, M. Ahn, G. , and D. , Design and Fabrication of a Multi-modal Confocal Endo-Microscope for Biomedical Imaging, Journal of the Optical Society of Korea, vol.15, issue.3, pp.300-304, 2011.
DOI : 10.3807/JOSK.2011.15.3.300

H. Makhlouf, A. F. Gmitro, A. A. Tanbakuchi, J. A. Udovich, and A. R. Rouse, Multispectral confocal microendoscope for in vivo and in situ imaging, Journal of Biomedical Optics, vol.13, issue.4, p.44016, 2008.
DOI : 10.1117/1.2950313

B. P. Joshi, S. J. Miller, C. M. Lee, E. J. Seibel, W. et al., Multispectral Endoscopic Imaging of Colorectal Dysplasia In Vivo, Gastroenterology, vol.143, issue.6, pp.1435-1437, 2012.
DOI : 10.1053/j.gastro.2012.08.053

M. Barbosa-brito, E. Guiot, L. Cavellini, J. Zhang, Q. Ni et al., Towards a real-time in vivo monitoring of PKA activity in deep brain regions using fibered fluorescence microscopy with dual emission detection, Proc. SFN'10, 2010.

F. Jean, G. Bourg-heckly, and B. Viellerobe, Fibered confocal spectroscopy and multicolor imaging system for in vivo fluorescence analysis, Optics Express, vol.15, issue.7, pp.4008-4017, 2007.
DOI : 10.1364/OE.15.004008

A. Osdoit, F. Lacombe, C. Cavé, S. Loiseau, and E. Peltier, To see the unseeable: confocal miniprobes for routine microscopic imaging during endoscopy, Endoscopic Microscopy II, pp.64320-64329, 2007.
DOI : 10.1117/12.701004

N. Savoire, B. André, and T. Vercauteren, Online Blind Calibration of Non-uniform Photodetectors: Application to Endomicroscopy, Proc. MICCAI'12, pp.639-646, 2012.
DOI : 10.1007/978-3-642-33454-2_79

URL : https://hal.archives-ouvertes.fr/hal-00813864

M. Elter, S. Rupp, and C. Winter, Physically Motivated Reconstruction of Fiberscopic Images, 18th International Conference on Pattern Recognition (ICPR'06), pp.599-602, 2006.
DOI : 10.1109/ICPR.2006.932

C. Winter, S. Rupp, M. Elter, C. Münzenmayer, H. Gerhäuser et al., Automatic Adaptive Enhancement for Images Obtained With Fiberscopic Endoscopes, IEEE Transactions on Biomedical Engineering, vol.53, issue.10, pp.2035-2046, 2006.
DOI : 10.1109/TBME.2006.877110

T. N. Ford, D. Lim, and J. Mertz, Fast optically sectioned fluorescence HiLo endomicroscopy, Journal of Biomedical Optics, vol.17, issue.2, p.21105, 2012.
DOI : 10.1117/1.JBO.17.2.021105.4

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382350

P. Besl and H. Mckay, A method for registration of 3-D shapes, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.14, issue.2, pp.239-256, 1992.
DOI : 10.1109/34.121791

B. Viellerobe, I. Janssens, K. Gombert, H. Gharbi, F. Lacombe et al., Simultaneous imaging of two fluorescent signals using a new fibered fluorescent confocal microscopy system, Proc. WMIC'11, 2011.