V. Arsigny, P. Fillard, X. Pennec, and N. Ayache, Log-Euclidean metrics for fast and simple calculus on diffusion tensors, Magnetic Resonance in Medicine, vol.52, issue.2, pp.411-421, 2006.
DOI : 10.1002/mrm.20965
URL : https://hal.archives-ouvertes.fr/inria-00502678

J. Ashburner, A fast diffeomorphic image registration algorithm, NeuroImage, vol.38, issue.1, pp.95-113, 2007.
DOI : 10.1016/j.neuroimage.2007.07.007

C. Brun, N. Leporé, X. Pennec, Y. Chou, O. Lopez et al., Comparison of Standard and Riemannian fluid registration for Tensor-Based Morphometry in HIV/AIDS, Workshop on Statistical Registration: Pair-wise and Group-wise alignment and atlas formation, 2007.

C. Brun, N. Leporé, X. Pennec, Y. Chou, A. Lee et al., A new registration method based on Log-Euclidean Tensor metrics and its application to genetic studies, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008.
DOI : 10.1109/ISBI.2008.4541196
URL : https://hal.archives-ouvertes.fr/inria-00616171

E. Christensen, R. Rabbitt, and M. Miller, Deformable templates using large deformation kinematics, IEEE Transactions on Image Processing, vol.5, issue.10, pp.1435-1447, 1996.
DOI : 10.1109/83.536892

A. Dale, B. Fischl, and M. Sereno, Cortical Surface-Based Analysis, NeuroImage, vol.9, issue.2, pp.179-94, 1999.
DOI : 10.1006/nimg.1998.0395

C. Davatzikos, M. Vaillant, S. Resnick, J. L. Prince, S. Letovsky et al., A Computerized Approach for Morphological Analysis of the Corpus Callosum, Journal of Computer Assisted Tomography, vol.20, issue.1, pp.88-97, 1996.
DOI : 10.1097/00004728-199601000-00017

S. Durrleman, X. Pennec, A. Trouvé, P. Thompson, and N. Ayache, Inferring brain variability from diffeomorphic deformations of currents: An integrative approach, Medical Image Analysis, vol.12, issue.5, pp.626-663, 2008.
DOI : 10.1016/j.media.2008.06.010
URL : https://hal.archives-ouvertes.fr/hal-00816052

C. Gramkow, Registration of 2D and 3D medical images, Master's thesis, 1996.

X. Hua, A. Leow, N. Parikshak, S. Lee, M. Chiang et al., Tensor-based morphometry as a neuroimaging biomarker for Alzheimer's disease: An MRI study of 676 AD, MCI, and normal subjects, NeuroImage, vol.43, issue.3, pp.458-469, 2008.
DOI : 10.1016/j.neuroimage.2008.07.013

M. Jenkinson, P. Bannister, J. Brady, and S. Smith, Improvised optimization for the robust and accurate linear registration and motion correction of brain images, Neuroimage, pp.17-825, 2002.

A. Joshi, D. Shattuck, P. Thompson, and R. Leahy, Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings, IEEE Transactions on Medical Imaging, vol.26, issue.12, pp.1657-1669, 2007.
DOI : 10.1109/TMI.2007.901432
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4516139/

A. Klein, J. Andersson, B. Ardekani, J. Ashburner, B. Avants et al., Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration, NeuroImage, vol.46, issue.3, pp.786-802, 2009.
DOI : 10.1016/j.neuroimage.2008.12.037
URL : https://hal.archives-ouvertes.fr/inserm-00360790

A. Leow, M. Chiang, I. Yanovsky, A. Lee, A. Lu et al., Statistical Properties of Jacobian Maps and the Realization of Unbiased Large-Deformation Nonlinear Image Registration, IEEE Transactions on Medical Imaging, vol.26, issue.6, pp.822-832, 2007.
DOI : 10.1109/TMI.2007.892646

N. Leporé, C. Brun, X. Pennec, Y. Chou, O. Lopez et al., Mean Template for Tensor-Based Morphometry Using Deformation Tensors, Proceedings, 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2007.
DOI : 10.1007/978-3-540-75759-7_100

N. Leporé, Y. Chou, O. Lopez, H. Aizenstein, J. Becker et al., Generalized Tensor-Based Morphometry of HIV/AIDS Using Multivariate Statistics on Deformation Tensors, IEEE Transactions on Medical Imaging, vol.27, issue.1, pp.129-141, 2008.
DOI : 10.1109/TMI.2007.906091

N. Leporé, Y. Chou, O. Lopez, H. Aizenstein, J. Becker et al., Fast 3D fluid registration of brain magnetic resonance images, Medical Imaging 2008: Physiology, Function, and Structure from Medical Images, pp.16-21, 2008.
DOI : 10.1117/12.774338

N. Leporé, C. Brun, Y. Chou, A. Lee, M. Barysheva et al., Best individual template selection from deformation tensor minimization, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp.14-17, 2008.
DOI : 10.1109/ISBI.2008.4541032

T. Nichols and A. Holmes, Nonparametric permutation tests for functional neuroimaging: A primer with examples, Human Brain Mapping, vol.4, issue.1, pp.1-25, 2001.
DOI : 10.1002/hbm.1058

X. Pennec, R. Stefanescu, V. Arsigny, P. Fillard, and N. Ayache, Riemannian Elasticity: A Statistical Regularization Framework for Non-linear Registration, Proceedings, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp.943-950, 2005.
DOI : 10.1007/11566489_116
URL : https://hal.archives-ouvertes.fr/inria-00502675

G. Postelnicu, L. Zollei, and B. Fischl, Combined Volumetric and Surface Registration, IEEE Transactions on Medical Imaging, vol.28, issue.4, pp.508-522, 2008.
DOI : 10.1109/TMI.2008.2004426
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2761957

P. Scout and J. Fleiss, Intraclass correlations: Uses in assessing rater reliability, Psychol Bull, vol.86, pp.420-428, 1979.

D. Shattuck and R. Leahy, BrainSuite: An automated cortical surface identification tool, Medical Image Analysis, vol.6, issue.2, pp.129-141, 2002.
DOI : 10.1016/S1361-8415(02)00054-3
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.105.7378

Y. Shi, P. M. Thompson, I. Dinov, S. Osher, and A. W. Toga, Direct cortical mapping via solving partial differential equations on implicit surfaces, Medical Image Analysis, vol.11, issue.3, pp.207-223, 2007.
DOI : 10.1016/j.media.2007.02.001

J. Storey and . Direct, A direct approach to false discovery rates, Journal of the Royal Statistical Society: Series B (Statistical Methodology), vol.82, issue.3, pp.479-498, 2002.
DOI : 10.1111/1467-9868.00346

P. Thompson and A. Toga, A surface-based technique for warping three-dimensional images of the brain, IEEE Transactions on Medical Imaging, vol.15, issue.4, pp.402-417, 1996.
DOI : 10.1109/42.511745

P. Thompson, J. Giedd, R. Woods, D. Macdonald, A. Evans et al., Growth patterns in the developing brain detected by using continuum mechanical tensor maps, Nature, vol.56, issue.6774, pp.190-193, 2000.
DOI : 10.1038/35004593

P. Thompson, R. Woods, M. Mega, and A. Toga, Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain, Human Brain Mapping, vol.22, issue.2, pp.81-92, 2000.
DOI : 10.1002/(SICI)1097-0193(200002)9:2<81::AID-HBM3>3.0.CO;2-8

Y. Wang, M. Chiang, and P. Thompson, Automated Surface Matching Using Mutual Information Applied to Riemann Surface Structures, Proceedings, Medical Image Computing and Computer Assisted Interventions (MICCAI), 2005.
DOI : 10.1007/11566489_82