J. Bestel, F. Clement, and M. Sorine, A Biomechanical Model of Muscle Contraction, Medical Image Computing and Computer Assisted Intervention (MICCAI), pp.1159-1161, 2001.
DOI : 10.1007/3-540-45468-3_143

A. S. Bortone, O. M. Hess, A. Chiddo, A. Gaglione, N. Locuratolo et al., Functional and structural abnormalities in patients with dilated cardiomyopathy, Journal of the American College of Cardiology, vol.14, issue.3, p.613623, 1989.
DOI : 10.1016/0735-1097(89)90102-2

R. Chabiniok, Personalized biomechanical heart modeling for clinical applications, 2011.
URL : https://hal.archives-ouvertes.fr/tel-00839929

R. Chabiniok, P. Moireau, P. Lesault, A. Rahmouni, J. Deux et al., Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, Biomechanics and Modeling in Mechanobiology, pp.1-22, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00654541

D. Chapelle, L. Tallec, P. Moireau, P. Sorine, and M. , ENERGY-PRESERVING MUSCLE TISSUE MODEL: FORMULATION AND COMPATIBLE DISCRETIZATIONS, International Journal for Multiscale Computational Engineering, vol.10, issue.2, pp.189-211, 2012.
DOI : 10.1615/IntJMultCompEng.2011002360
URL : https://hal.archives-ouvertes.fr/hal-00678772

K. D. Costa, J. Holmes, and A. D. Mcculloch, Modelling cardiac mechanical properties in three dimensions, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.359, issue.1783, pp.1233-1250, 2001.
DOI : 10.1098/rsta.2001.0828

H. Delingette, F. Billet, K. C. Wong, M. Sermesant, K. Rhode et al., Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation, IEEE transactions on bio-medical engineeringIn Press, 2011.
DOI : 10.1109/TBME.2011.2160347
URL : https://hal.archives-ouvertes.fr/inria-00616183

O. Ecabert, J. Peters, M. J. Walker, T. Ivanc, C. Lorenz et al., Segmentation of the heart and great vessels in CT images using a model-based adaptation framework, Medical Image Analysis, vol.15, issue.6, pp.863-876, 2011.
DOI : 10.1016/j.media.2011.06.004

M. R. Ginks, P. D. Lambiase, S. G. Duckett, J. Bostock, P. Chinchapatnam et al., A Simultaneous X-Ray/MRI and Noncontact Mapping Study of the Acute Hemodynamic Effect of Left Ventricular Endocardial and Epicardial Cardiac Resynchronization Therapy in Humans, Circulation: Heart Failure, vol.4, issue.2, pp.170-179, 2011.
DOI : 10.1161/CIRCHEARTFAILURE.110.958124

G. Holzapfel and R. Ogden, Constitutive modelling of passive myocardium: a structurally based framework for material characterization, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.192, issue.Pt 2, pp.3445-3475, 1902.
DOI : 10.1016/0021-9290(87)90279-X

J. Humphrey, R. Strumpf, and F. Yin, Determination of a constitutive relation for passive myocardium: I. a new functional form, Journal of biomechanical engineering, vol.112, p.333, 1990.

P. Hunter, M. Nash, and G. Sands, Computational electromechanics of the heart, Computational biology of the heart, pp.345-407, 1997.

A. Huxley, Muscle structure and theories of contraction, Progress in biophysics and biophysical chemistry 7, p.255, 1957.

S. Julier and J. Uhlmann, New extension of the Kalman filter to nonlinear systems, Signal Processing, Sensor Fusion, and Target Recognition VI, p.26, 1997.
DOI : 10.1117/12.280797

R. C. Kerckhoffs, Patient-Specific Modeling of the Cardiovascular System, Technology-Driven Personalized Medicine, 2010.

R. Klabunde, Cardiovascular physiology concepts, 2011.

P. Krejci, J. Sainte-marie, M. Sorine, and J. Urquiza, Solutions to muscle fiber equations and their long time behaviour, Nonlinear Analysis: Real World Applications, vol.7, issue.4, pp.535-558, 2006.
DOI : 10.1016/j.nonrwa.2005.03.021

I. Larrabide, P. Omedas, Y. Martelli, X. Planes, M. Nieber et al., GIMIAS: An Open Source Framework for Efficient Development of Research Tools and Clinical Prototypes, Functional Imaging and Modeling of the Heart, pp.417-426, 2009.
DOI : 10.1007/s00424-002-0890-1

H. Liu and P. Shi, Maximum a posteriori strategy for the simultaneous motion and material property estimation of the heart, Biomedical Engineering IEEE Transactions on, vol.56, issue.2, pp.378-389, 2009.

T. Mansi, X. Pennec, M. Sermesant, H. Delingette, and N. Ayache, iLogDemons: A Demons-Based Registration Algorithm for??Tracking Incompressible Elastic Biological Tissues, International Journal of Computer Vision, vol.28, issue.12, pp.92-111, 2011.
DOI : 10.1007/s11263-010-0405-z
URL : https://hal.archives-ouvertes.fr/inria-00616187

S. Marchesseau, H. Delingette, M. Sermesant, and N. Ayache, Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform, Biomechanics and Modeling in Mechanobiology, vol.4, issue.7, 2012.
DOI : 10.1007/s10237-012-0446-z
URL : https://hal.archives-ouvertes.fr/hal-00813847

S. Marchesseau, H. Delingette, M. Sermesant, K. Rhode, S. Duckett et al., Cardiac Mechanical Parameter Calibration Based on the Unscented Transform, Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), 2012.
DOI : 10.1007/978-3-642-33418-4_6
URL : https://hal.archives-ouvertes.fr/hal-00813848

R. Mazhari and A. D. Mcculloch, Effect of laminar orthotropic myofiber architecture on regional stress and strain in the canine left ventricule, Journal of Elasticity, vol.61, issue.4, pp.143-164, 2000.

K. Mcleod, A. Prakosa, T. Mansi, M. Sermesant, and X. Pennec, An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue, Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function, pp.54-65, 2012.
DOI : 10.1007/978-3-642-28326-0_6
URL : https://hal.archives-ouvertes.fr/hal-00813851

P. Moireau and D. Chapelle, Reduced-order Unscented Kalman Filtering with application to parameter identification in large-dimensional systems, ESAIM: Control, Optimisation and Calculus of Variations, vol.17, issue.2, pp.380-40510, 2011.
DOI : 10.1051/cocv/2010006
URL : https://hal.archives-ouvertes.fr/inria-00550104

M. Nash, Mechanics and material properties of the heart using an anatomically accurate mathematical model, 1998.

J. Peyrat, M. Sermesant, X. Pennec, H. Delingette, C. Xu et al., A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts, IEEE Transactions on Medical Imaging, vol.26, issue.11, pp.1500-1514, 2007.
DOI : 10.1109/TMI.2007.907286
URL : https://hal.archives-ouvertes.fr/inria-00616023

J. Relan, P. Chinchapatnam, M. Sermesant, K. Rhode, M. Ginks et al., Coupled personalization of cardiac electrophysiology models for prediction of ischaemic ventricular tachycardia, Interface Focus, vol.48, issue.12, pp.396-407, 2011.
DOI : 10.1016/j.jacc.2006.07.062
URL : https://hal.archives-ouvertes.fr/inria-00616188

K. Rhode, M. Sermesant, D. Brogan, S. Hegde, J. Hipwell et al., A system for real-time XMR guided cardiovascular intervention, IEEE Transactions on Medical Imaging, vol.24, issue.11, pp.1428-1440, 2005.
DOI : 10.1109/TMI.2005.856731
URL : https://hal.archives-ouvertes.fr/inria-00615663

F. Sachse, Computational cardiology: modeling of anatomy, electrophysiology, and mechanics, 2004.
DOI : 10.1007/b96841

J. Sainte-marie, D. Chapelle, R. Cimrman, and M. Sorine, Modeling and estimation of the cardiac electromechanical activity, Computers & Structures, vol.84, issue.28, pp.1743-1759, 2006.
DOI : 10.1016/j.compstruc.2006.05.003
URL : https://hal.archives-ouvertes.fr/hal-00839206

A. Schäffler and S. Schmidt, Anatomie Physiologie Biologie, 1999.

M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet et al., Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation, Medical Image Analysis, vol.16, issue.1, pp.201-215, 2012.
DOI : 10.1016/j.media.2011.07.003

M. Sermesant, H. Delingette, and N. Ayache, An electromechanical model of the heart for image analysis and simulation, IEEE Transactions on Medical Imaging, vol.25, issue.5, pp.612-625, 2006.
DOI : 10.1109/TMI.2006.872746
URL : https://hal.archives-ouvertes.fr/inria-00614991

M. Sermesant, E. Konukoglu, H. Delingette, Y. Coudiere, P. Chinchaptanam et al., An Anisotropic Multi-front Fast Marching Method for Real-Time Simulation of Cardiac Electrophysiology, Proceedings of Functional Imaging and Modeling of the Heart, pp.7-160, 2007.
DOI : 10.1007/978-3-540-72907-5_17
URL : https://hal.archives-ouvertes.fr/inria-00616051

N. Stergiopulos, B. Westerhof, and N. Westerhof, Total arterial inertance as the fourth element of the windkessel model, American Journal of Physiology-Heart and Circulatory Physiology, vol.276, issue.1, p.81, 1999.

H. Sundar, C. Davatzikos, and G. Biros, Biomechanicallyconstrained 4D estimation of myocardial motion. Medical Image Computing and Computer-Assisted Intervention?MICCAI, pp.257-265, 2009.

C. Tobon-gomez, M. De-craene, A. Dahl, S. Kapetanakis, G. Carr-white et al., A multimodal database for the 1st cardiac motion analysis challenge, Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function, pp.32-43, 2011.

N. Toussaint, C. T. Stoeck, S. Kozerke, M. Sermesant, and P. G. Batchelor, In vivo Human 3D Cardiac Fibre Architecture: Reconstruction Using Curvilinear Interpolation of Diffusion Tensor Images, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10, pp.418-425, 2010.
DOI : 10.1007/978-3-642-15705-9_51
URL : https://hal.archives-ouvertes.fr/inria-00616159

E. Wan and R. Van-der-merwe, The unscented Kalman filter for nonlinear estimation, Proceedings of the IEEE 2000 Adaptive Systems for Signal Processing, Communications, and Control Symposium (Cat. No.00EX373), pp.153-158, 2000.
DOI : 10.1109/ASSPCC.2000.882463

V. Wang, H. Lam, D. Ennis, B. Cowan, A. Young et al., Modelling passive diastolic mechanics with quantitative MRI of cardiac structure and function, Medical Image Analysis, vol.13, issue.5, pp.773-784, 2009.
DOI : 10.1016/j.media.2009.07.006

E. Williams, J. Kaplan, F. Thatcher, G. Zimmerman, and S. Knoebel, Prolongation of proton spin lattice relaxation times in regionally ischemic tissue from dog hearts, Journal of Nuclear Medicine, vol.21, issue.5, p.449, 1980.

K. C. Wong, L. Wang, H. Zhang, H. Liu, and P. Shi, Simulation of Active Cardiac Dynamics with Orthotropic Hyperelastic Material Model, The MIDAS Journal -Computational Biomechanics for Medicine, 2008.

J. Xi, P. Lamata, J. Lee, P. Moireau, D. Chapelle et al., Myocardial transversely isotropic material parameter estimation from in-silico measurements based on a reduced-order unscented Kalman filter, Journal of the Mechanical Behavior of Biomedical Materials, vol.4, issue.7, 2011.
DOI : 10.1016/j.jmbbm.2011.03.018