Complex Functional Rates in the Modeling of Nano Devices

Cristian Versari 1, * Gianluigi Zavattaro 2, 3
* Corresponding author
1 BioComputing - Programming Languages for Biological Modeling and Simulation
LIFL - Laboratoire d'Informatique Fondamentale de Lille
3 FOCUS - Foundations of Component-based Ubiquitous Systems
CRISAM - Inria Sophia Antipolis - Méditerranée , DISI - Dipartimento di Informatica - Scienza e Ingegneria [Bologna]
Abstract : We give an overview of recent work on the rule-based modeling of nano devices. In particular, our experience in the modeling of a nanoscale elevator suggested us to enhance rule-based modeling with complex functional rates that can be used to express rates that depend on the current state of the entire complexes in which the reacting molecules reside.
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Submitted on : Thursday, May 23, 2013 - 9:41:27 AM
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Cristian Versari, Gianluigi Zavattaro. Complex Functional Rates in the Modeling of Nano Devices. Electronic Notes in Theoretical Computer Science, Elsevier, 2013, Proceedings of the Third International Workshop on Interactions Between Computer Science and Biology (CS2Bio'12), 293, pp.3-15. ⟨hal-00825147⟩

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