Telling Stories Fast

Michele Borassi 1 Pierluigi Crescenzi 2 Vincent Lacroix 3 Andrea Marino 2 Marie-France Sagot 3, * Paulo Vieira Milreu 3
* Corresponding author
1 SNS - Scuola Normale Superiore di Pisa
2 DSI - Dipartimento di Sistemi e Informatica
3 BAMBOO - An algorithmic view on genomes, cells, and environments
Inria Grenoble - Rhône-Alpes, LBBE - Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
Abstract : This paper presents a linear-time delay algorithm for enumerating all directed acyclic subgraphs of a directed graph G(V,E) that have their sources and targets included in two subsets S and T of V, respectively. From these subgraphs, called pitches, the maximal ones, called stories, may be extracted in a dramatically more efficient way in relation to a previous story telling algorithm. The improvement may even increase if a pruning technique is further applied that avoids generating many pitches which have no chance to lead to a story. We experimentally demonstrate these statements by making use of a quite large dataset of real metabolic pathways and networks.
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Conference papers
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https://hal.inria.fr/hal-00835201
Contributor : Marie-France Sagot <>
Submitted on : Tuesday, June 18, 2013 - 11:14:01 AM
Last modification on : Thursday, November 21, 2019 - 1:14:13 PM

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Michele Borassi, Pierluigi Crescenzi, Vincent Lacroix, Andrea Marino, Marie-France Sagot, et al.. Telling Stories Fast. 12th International Symposium Experimental Algorithms (SEA), Jun 2013, Rome, Italy. pp.200-211. ⟨hal-00835201⟩

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