Protein function prediction via graph kernels, Bioinformatics, vol.21, issue.Suppl 1, pp.47-56, 2005. ,
DOI : 10.1093/bioinformatics/bti1007
Ultrafast shape recognition for similarity search in molecular databases, Proceedings of the Royal Society, pp.1307-1321, 2007. ,
DOI : 10.1098/rspa.2007.1823
Ultrafast shape recognition to search compound databases for similar molecular shapes, Journal of Computational Chemistry, vol.1, issue.10, pp.1711-1723, 2007. ,
DOI : 10.1002/jcc.20681
Three-Dimensional Shape-Structure Comparison Method for Protein Classification, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.3, issue.3, pp.193-207, 2006. ,
DOI : 10.1109/TCBB.2006.43
A search engine for 3D models, ACM Transactions on Graphics, vol.22, issue.1, pp.83-105, 2003. ,
DOI : 10.1145/588272.588279
Fast protein tertiary structure retrieval based on global surface shape similarity, Proteins: Structure, Function, and Bioinformatics, vol.412, issue.Suppl, pp.1259-1273, 2008. ,
DOI : 10.1002/prot.22030
Flexible structure alignment by chaining aligned fragment pairs allowing twists, Bioinformatics, vol.19, issue.Suppl 2, pp.246-255, 2003. ,
DOI : 10.1093/bioinformatics/btg1086
FATCAT: a web server for flexible structure comparison and structure similarity searching, Nucleic Acids Research, vol.32, issue.Web Server, pp.582-585, 2004. ,
DOI : 10.1093/nar/gkh430
IDSS: deformation invariant signatures for molecular shape comparison, BMC Bioinformatics, vol.10, issue.1, pp.1-14, 2009. ,
DOI : 10.1186/1471-2105-10-157
Using diffusion distances for flexible molecular shape comparison, BMC Bioinformatics, vol.11, issue.1, pp.1-15, 2010. ,
DOI : 10.1186/1471-2105-11-480
Computing the inner distances of volumetric models for articulated shape description with a visibility graph, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.23, issue.12, pp.2538-2544, 2011. ,
Gaussian-Weighted RMSD Superposition of Proteins: A Structural Comparison for Flexible Proteins and Predicted Protein Structures, Biophysical Journal, vol.90, issue.12, pp.4558-4573, 2006. ,
DOI : 10.1529/biophysj.105.066654
Using least median of squares for structural superposition of flexible proteins, BMC Bioinformatics, vol.10, issue.1, pp.1-23, 2009. ,
DOI : 10.1186/1471-2105-10-29
THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures, Bioinformatics, vol.22, issue.17, pp.2171-2172, 2006. ,
DOI : 10.1093/bioinformatics/btl332
Empirical Bayes hierarchical models for regularizing maximum likelihood estimation in the matrix Gaussian Procrustes problem, Proceedings of the National Academy of Sciences, vol.103, issue.49, pp.18521-18527, 2006. ,
DOI : 10.1073/pnas.0508445103
The protein threading problem with sequence amino acid interaction preferences is NP-complete, "Protein Engineering, Design and Selection", vol.7, issue.9, pp.1059-1068, 1994. ,
DOI : 10.1093/protein/7.9.1059
A fast and efficient method for 2D and 3D molecular shape description, Journal of Computer-Aided Molecular Design, vol.31, issue.6, pp.607-628, 1992. ,
DOI : 10.1007/BF00126218
New method for rapid characterisation of molecular shapes: applications in drug design, Journal of Chemical Information and Computer Sciences, vol.33, pp.79-85, 1993. ,
An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison, Journal of Molecular Graphics and Modelling, vol.26, issue.7, pp.1035-1045, 2008. ,
DOI : 10.1016/j.jmgm.2007.08.009
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons, Bioinformatics, vol.21, issue.10, pp.2347-2355, 2005. ,
DOI : 10.1093/bioinformatics/bti337
A simple shape characteristic of protein protein recognition, Bioinformatics, vol.23, issue.7, pp.789-792, 2007. ,
DOI : 10.1093/bioinformatics/btm018
Shape distributions, ACM Transactions on Graphics, vol.21, issue.4, pp.807-832, 2002. ,
DOI : 10.1145/571647.571648
Moment invariants as shape recognition technique for comparing protein binding sites, Bioinformatics, vol.23, issue.23, pp.3139-3146, 2007. ,
DOI : 10.1093/bioinformatics/btm503
A web-based three-dimensional protein retrieval system by matching visual similarity, Bioinformatics, vol.21, issue.13, pp.3056-3057, 2005. ,
DOI : 10.1093/bioinformatics/bti458
Shape Signatures:?? A New Approach to Computer-Aided Ligand- and Receptor-Based Drug Design, Journal of Medicinal Chemistry, vol.46, issue.26, pp.465674-5690, 2003. ,
DOI : 10.1021/jm030242k
Navigation and Discovery in 3D CAD Repositories, IEEE Computer Graphics and Applications, vol.27, issue.4, pp.38-47, 2007. ,
DOI : 10.1109/MCG.2007.87
Modern Multidimensional Scaling: Theory and Applications, Journal of Educational Measurement, vol.40, issue.3, 2005. ,
DOI : 10.1007/BF02289341
Rotation invariant spherical harmonic representation of 3D shape descriptors, Symposium on Geometry Processing, pp.167-175, 2003. ,
Shape complementarity at the hemoglobin ?1?1 subunit interface, Biopolymers, vol.12, issue.7, pp.1229-1247, 1986. ,
DOI : 10.1002/bip.360250705
Effective similarity search on voxelized CAD objects, Eighth International Conference on Database Systems for Advanced Applications, 2003. (DASFAA 2003). Proceedings., pp.27-36, 2003. ,
DOI : 10.1109/DASFAA.2003.1192365
3DMolNavi: A web-based retrieval and navigation tool for flexible molecular shape comparison, BMC Bioinformatics, vol.13, issue.1, p.95, 2012. ,
DOI : 10.1002/bip.360250705
URL : https://hal.archives-ouvertes.fr/hal-00844108