Genetics: junk DNA as an evolutionary force, Nature, vol.443, pp.521-524, 2006. ,
Jumping genes and epigenetics: Towards new species, Gene, vol.454, pp.1-7, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00850384
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity, Mutat Res, vol.616, pp.46-59, 2007. ,
The necessary junk: new functions for transposable elements, Hum Mol Genet, vol.16, issue.2, pp.159-167, 2007. ,
Molecular domestication of transposable elements: from detrimental parasites to useful host genes, Cell Mol Life Sci, vol.66, pp.1073-1093, 2009. ,
C-GATE -catalogue of genes affected by transposable elements, Mob DNA, vol.3, p.9, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02645414
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA, BMC Genomics, vol.9, p.226, 2008. ,
Transposable elements donate lineage-specific regulatory sequences to host genomes, Cytogenet Genome Res, vol.110, pp.333-341, 2005. ,
Transposable elements and the evolution of regulatory networks, Nat Rev Genet, vol.9, pp.397-405, 2008. ,
The significance of responses of the genome to challenge, Science, vol.226, pp.792-801, 1984. ,
Epigenetic regulation of transposable elements in plants, Annu Rev Plant Biol, vol.60, pp.43-66, 2009. ,
The evolution of RNAi as a defence against viruses and transposable elements, Philos Trans R Soc Lond B Biol Sci, vol.364, pp.99-115, 2009. ,
DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs, Cell Stem Cell, vol.8, pp.676-687, 2011. ,
Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET, Nature, vol.464, pp.927-931, 2010. ,
A ''mille-feuille'' of silencing: Epigenetic control of transposable elements, Biochim Biophys Acta, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01917175
Histone modification and the control of heterochromatic gene silencing in Drosophila, Chromosome Res, vol.14, pp.377-392, 2006. ,
Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster, Annu Rev Entomol, vol.52, pp.171-192, 2007. ,
Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones, PLoS Genet, vol.4, p.16, 2008. ,
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline, Nucleic Acids Res, vol.35, pp.5430-5438, 2007. ,
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin, Genome Res, vol.21, pp.147-163, 2011. ,
A high-resolution wholegenome map of key chromatin modifications in the adult Drosophila melanogaster, PLoS Genet, vol.7, p.1002380, 2011. ,
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila, Faseb J, vol.23, pp.1482-1489, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00428323
Genome-scale profiling of histone H3.3 replacement patterns, Nat Genet, vol.37, pp.1090-1097, 2005. ,
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes, Genome Biology and Evolution, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00850380
Sequence divergence within transposable element families in the Drosophila melanogaster genome, Genome Res, vol.13, pp.1889-1896, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00427441
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective, Genome Biol, vol.3, p.84, 2002. ,
, Finishing the euchromatic sequence of the human genome, Nature, vol.431, pp.931-945, 2004.
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes, Genome Biol, vol.10, p.22, 2009. ,
Wake up of transposable elements following Drosophila simulans worldwide colonization, Mol Biol Evol, vol.16, pp.1251-1255, 1999. ,
URL : https://hal.archives-ouvertes.fr/hal-00428465
Evolution of genes and genomes on the Drosophila phylogeny, Nature, vol.450, pp.203-218, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02667683
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen, Cell, vol.136, pp.461-472, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02666128
, Epigenetics for ecologists. Ecol Lett, vol.11, pp.106-115, 2008.
Epigenetics Lessons from Twins: Prospects for Autoimmune Disease, Clin Rev Allergy Immunol, 2009. ,
Epigenomic consequences of immortalized plant cell suspension culture, PLoS Biol, vol.6, pp.2880-2895, 2008. ,
Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup, Mol Biol Evol, vol.23, pp.162-167, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00427905
Infra-and Transspecific Clues to Understanding the Dynamics of Transposable Elements, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00428338
Inherited epigenetic variation-revisiting soft inheritance, Nat Rev Genet, vol.7, pp.395-401, 2006. ,
Epigenome dynamics: a quantitative genetics perspective, Nat Rev Genet, vol.9, pp.883-890, 2008. ,
The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene, Genetics, vol.173, pp.1115-1123, 2006. ,
Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans, J Mol Evol, vol.42, pp.443-451, 1996. ,
URL : https://hal.archives-ouvertes.fr/hal-00435042
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes, Genome Biol, vol.3, p.34, 2002. ,
ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos, Nat Protoc, vol.1, pp.2839-2855, 2006. ,
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes, BMC Evol Biol, vol.9, p.174, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00428408