J. Bernardo-cuenca-grau, E. Euzenat, and . Jimenez-ruiz, Christian Meilicke, and Cássia Trojahn dos Santos have been partially supported by the SEALS (IST-2009- 238975) European project in the previous years. Ernesto and Bernardo have also been partially supported by the Seventh Framework Program (FP7) of the European Commission under Grant Agreement 318338, the Royal Society, and the EPSRC projects Score!, ExODA and MaSI 3 . Cássia Trojahn dos Santos and Roger Granada are also partially supported by the CAPES-COFECUB Cameleon project number 707

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E. Jiménez-ruiz and B. Grau, LogMap: Logic-Based and Scalable Ontology Matching, Proc. 10th International Semantic Web Conference (ISWC), Bonn (DE), pp.273-288, 2011.
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E. Jiménez-ruiz, C. Meilicke, B. C. Grau, and I. Horrocks, Evaluating mapping repair systems with large biomedical ontologies, Proc. 26th Description Logics Workshop, 2013.

Y. Kazakov, M. Krötzsch, and F. Simancik, Concurrent classification of EL ontologies, Proc. 10th International Semantic Web Conference (ISWC), pp.305-320, 2011.

C. Meilicke, Alignment Incoherence in Ontology Matching, 2011.

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H. Paulheim, S. Hertling, and D. Ritze, Towards Evaluating Interactive Ontology Matching Tools, Proc. 10th Extended Semantic Web Conference (ESWC), Montpellier (FR), pp.31-45, 2013.
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C. Pesquita, D. Faria, E. Santos, and F. Couto, To repair or not to repair: reconciling correctness and coherence in ontology reference alignments, Proc. 8th ISWC ontology matching workshop (OM), p.page this volume, 2013.

D. Ritze and H. Paulheim, Towards an automatic parameterization of ontology matching tools based on example mappings, Proc. 6th ISWC ontology matching workshop (OM), Bonn (DE), pp.37-48, 2011.

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