F. Affholder, P. Bonnal, D. Jourdain, and E. Scopel, Small scale farming diversity and bioeconomic variability: a modelling approach, Proceedings of the 15th International Symposium of the association for farming systems research-extension. Pretoria, pp.952-959, 1998.

J. Attonaty, M. Chatelin, and F. Garcia, Interactive simulation modeling in farm decision-making, Computers and Electronics in Agriculture, vol.22, issue.2-3, pp.157-170, 1999.
DOI : 10.1016/S0168-1699(99)00015-0

C. Aubry, F. Papy, and A. Capillon, Modelling decision-making processes for annual crop management, Agricultural Systems, vol.56, issue.1, pp.45-65, 1998.
DOI : 10.1016/S0308-521X(97)00034-6

J. K. Baker, STOCHASTIC MODELING FOR AUTOMATIC SPEECH UNDERSTANDING, Speech Recognition, pp.521-542, 1974.
DOI : 10.1016/B978-0-08-051584-7.50028-0

P. Baudoux, G. Kazenwadel, and R. Doluschitz, On-farm effects and farmer attitudes towards agri-environmental programs: a case study in baden-wüttemberg, Etudes et Recherches sur les Systèmes Agraires et le Développement, pp.333-356, 1998.

B. Benmiloud and W. Pieczynski, Estimation des paramètres dans les cha??nescha??nes de Markov cachées et segmentation d'images. Traitement du signal, pp.433-454, 1995.

M. Beno??tbeno??t, F. L. Ber, and J. Mari, Recherche des successions de cultures et de leursévolutionsleursévolutions : analyse par HMM des données Ter-Uti en Lorraine, Agreste Vision -La statistique agricole, pp.23-30, 2001.

M. Beno??tbeno??t, J. Deffontaines, F. Gras, E. Bienaimé, and R. Cosserat, Agriculture et qualité de l'eau. une approche interdisciplinaire de la pollution par les nitrates d'un bassin d'alimentation, Cahiers Agricultures, vol.6, pp.97-105, 1997.

M. Beno??tbeno??t, J. Fiorelli, P. Morlon, and Y. Pons, Technical management: a central point for agronomy challenge. First European Congress of Agronomy, Session V-01, 1990.

M. Beno??tbeno??t and M. C. Muhar, Farmers, landuse and groundwater quality: an interdisciplinary approach. Congress " Future of the Land, 1993.

M. Beno??tbeno??t and F. Papy, La place de l'agronomie dans la problématique environnementale. Les dossiers de l'environnement de l'INRA, pp.53-62, 1998.

D. J. Berndt, Finding Patterns in Time Series, Advances in Knowledge Discovery and Data Mining, pp.229-248

J. Boiffin, E. Malézieux, and D. Picard, Cropping systems for the future. 3rd International crop science congress, pp.17-22, 2000.

R. Brunet, La carte-modèle et les chorèmes, Mappemonde, vol.86, issue.4, pp.3-6, 1986.

F. Burel and J. Baudry, Hedgerow Network Patterns and Processes in France, Changing Landscape: an ecological perspective, pp.99-120, 1990.
DOI : 10.1007/978-1-4612-3304-6_7

P. G. Cox, Some issues in the design of agricultural decision support systems, Agricultural Systems, vol.52, issue.2-3, pp.355-381, 1996.
DOI : 10.1016/0308-521X(96)00063-7

S. Dabbert, S. Herrmann, T. Vogel, T. Winter, and H. Schuster, Socio-economic analysis and modelling of agricultural water demands and land use, German Programme on Global Change in Hydrological Cycle Status Report, 2000.

C. T. De-wit, Resource use efficiency in agriculture, Agricultural Systems, vol.40, issue.1-3, pp.125-151, 1992.
DOI : 10.1016/0308-521X(92)90018-J

J. Deffontaines, J. Cheylan, S. Lardon, and H. Théry, Managing rural areas. From pratices to model, Systems studies in agriculture and rural development, pp.383-392, 1994.

A. P. Dempster, N. M. Laird, and D. B. Rubin, Maximum-Likelihood From Incomplete Data Via The EM Algorithm, Journal of Royal Statistic Society, B (methodological), vol.39, pp.1-38, 1977.

M. Dunham, Data Mining, 2003.

U. Fayard, G. Piatesky-shapiro, P. Smyth, and R. Uthurusamy, Advances in Knowledge Discovery in Data Minig, 1996.

S. Fine, Y. Singer, and N. Tishby, The Hierarchical Hidden Markov Model: Analysis and Applications, Machine Learning, pp.41-62, 1998.

L. Fresco, Crop science: scientific and ethical challenges to meet human needs., 3rd International crop science congress, pp.17-22, 2000.
DOI : 10.1079/9780851995304.0369

F. Gaury, Systèmes de culture et teneurs en nitrates des eaux souterraines : Dynamique passée et actuelle en région de polyculturépolyculturé elevage sur le périmètre d'un g??teg??te hydrominéral, 1992.

S. Hergalant, B. Aigle, B. Decaris, J. Mari, and P. Leblond, HMM, an Efficient Way to Detect Transcriptional Promoters in Bacterial Genomes, European Conference on Computational Biology -ECCB'2003 poster in conjonction with the french national conference on Bioinformatics, pp.417-419, 2003.
URL : https://hal.archives-ouvertes.fr/inria-00099570

S. Herrmann, S. Dabbert, and H. Schwarz-von-raumer, Ecological threshold values as indicators for biodiversity -economic and ecological consequences, Agriculture, Ecosystems and Environment, pp.493-50, 2003.

J. Adibi and W. Shen, Self-Similar Layered Hidden Markov Models, 5th European Conference on Principles of Knowledge Discovery in Databases, 2001.
DOI : 10.1007/3-540-44794-6_1

H. Jonas, Le principe de responsabilité Uné ethique pour la civilisation technologique " Das Prinzip Verantwortung, Editions du Cerf, 1979.

M. Jordan and Z. Ghahramani, Factorial Hidden Markov Models, Machine Learning, vol.29, issue.2 3, pp.245-273, 1997.

E. F. Lambin, X. Baulies, N. Bockstael, G. Fischer, and T. Krug, Land-use and land-cover change (LUCC): implementation strategy. IGBP Rep. 48, IHDP Rep, Int. Geosph.-Biosph. Program., Int. Hum. Dimens. Glob. Environ. Change Program, vol.10, 1999.

S. Lardon, J. Deffontaines, J. Baudry, and M. Beno??tbeno??t, L'espace est aussi ailleurs, Modélisation systémique et système agraire. Décision et organisation, pp.321-337, 1990.

F. , L. Ber, and M. Beno??tbeno??t, Modelling the spatial organisation of land use in a farming territory

F. , L. Ber, M. Beno??tbeno??t, C. Schott, J. Mari et al., Studying Crop Sequences With CarrotAge, a HMM-Based Data Mining Software, Ecological Modelling, vol.191, issue.1, pp.170-185, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00017169

P. Gal and F. Papy, Co-ordination processes in a collectively managed cropping system: Double cropping of irrigated rice in Senegal, Agricultural Systems, vol.57, issue.2, pp.135-159, 1998.
DOI : 10.1016/S0308-521X(97)00074-7

M. Ledoux and S. Thomas, De la photographie aériennè a la production de blé, Agreste, la statistique agricole, 1992.

M. Ledoux and S. Thomas, De la photographie aériennè a la production de blé, AGRESTE, la statistique agricole, 1992.

A. Lovett, S. Herrmann, K. Appleton, and T. Winter, Landscape modelling and visualisation for environmental planning in intensive agricultural areas, Trends in Landscape Modeling, pp.114-122, 2003.

J. Mari, J. Haton, and A. Kriouile, Automatic word recognition based on second-order hidden Markov models, IEEE Transactions on Speech and Audio Processing, vol.5, issue.1, pp.22-25, 1997.
DOI : 10.1109/89.554265

J. Mari, E. Lazrak, and M. Beno??tbeno??t, Time space stochastic modelling of agricultural landscapes for environmental issues. Environmental modelling & software, pp.219-227, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00807178

J. Mari and R. Schott, Probabilistic and Statistical Methods in Computer Science, 2001.
DOI : 10.1007/978-1-4757-6280-8
URL : https://hal.archives-ouvertes.fr/inria-00100932

J. Mari and F. L. Ber, Temporal and spatial data mining with second-order hidden markov models, Fourth International Conference on Knowledge Discovery and Discrete Mathematics -Journées de l'informatique Messine -JIM'2003, pp.247-254, 2003.
DOI : 10.1007/s00500-005-0501-0
URL : https://hal.archives-ouvertes.fr/inria-00099573

J. F. Mari, F. L. Ber, and M. Beno??tbeno??t, Fouille de données agricoles par modèles de markov cachés, pp.197-205, 2000.

M. Meybeck, G. De-marsilly, and E. Fustec, La Seine en son bassin, fonctionnement d'un système fluvial anthropisé, 1998.

B. J. Miflin, Sugar beet production: strategies for the future, Proceedings of the 60th IIRB Congress, pp.253-262, 1997.

C. Mignolet, C. Schott, and M. Beno??tbeno??t, Spatial dynamics of agricultural practices on a basin territory: a retrospective study to implement models simulating nitrate flow. The case of the Seine basin, Agronomie, vol.24, issue.4
DOI : 10.1051/agro:2004015
URL : https://hal.archives-ouvertes.fr/hal-00886024

P. Morlon and M. Beno??tbeno??t, ??tude m??thodologique d'un parcellaire d'exploitation agricole en tant que syst??me, Agronomie, vol.10, issue.6, pp.499-508, 1990.
DOI : 10.1051/agro:19900608

M. Sebillotte, Some concepts for analysing farming and cropping systems and for understanding their different effects, Proceedings of the first Congress of European Society of Agronomy, pp.1-16, 1990.

M. Sebillotte, Système de culture, un concept opératoire pour les agronomes, Les systèmes de culture, pp.165-196, 1990.

J. T. Tou and R. Gonzales, Pattern Recognition Principles, 1974.

P. M. Van-dijk, F. J. Kwaad, and M. Klapwijk, RETENTION OF WATER AND SEDIMENT BY GRASS STRIPS, Hydrological Processes, vol.10, issue.8, pp.1069-1080, 1996.
DOI : 10.1002/(SICI)1099-1085(199608)10:8<1069::AID-HYP412>3.0.CO;2-4

P. M. Van-dijk, M. Van-der-zijp, and F. J. Kwaad, SOIL ERODIBILITY PARAMETERS UNDER VARIOUS CROPPING SYSTEMS OF MAIZE, Hydrological Processes, vol.2, issue.8, pp.1061-1067, 1996.
DOI : 10.1002/(SICI)1099-1085(199608)10:8<1061::AID-HYP411>3.0.CO;2-V

P. Vereijken, A methodic way to more sustainable farming systems, Netherlands Journal of Agricultural Science, vol.40, pp.209-223, 1992.