Identification of a gene signature of a pre-transformation process by senescence evasion in normal human epidermal keratinocytes

Nathalie Martin 1, 2, 3, 4 Clara Salazar-Cardozo 1, 3, 4, 2 Chantal Vercamer 1, 3, 4, 2 Louise Ott 3, 5 Guillemette Marot 6, 7 Predrag Slijepcevic 8 Corinne Abbadie 1, 3, 4, 2 Olivier Pluquet 1, 3, 4, 2, *
* Auteur correspondant
6 MODAL - MOdel for Data Analysis and Learning
Inria Lille - Nord Europe, LPP - Laboratoire Paul Painlevé - UMR 8524, CERIM - Santé publique : épidémiologie et qualité des soins-EA 2694, Polytech Lille, Université de Lille 1, IUT’A
Abstract : Background
Epidemiological data show that the incidence of carcinomas in humans is highly dependent on age. However, the initial steps of the age-related molecular oncogenic processes by which the switch towards the neoplastic state occurs remain poorly understood, mostly due to the absence of powerful models. In a previous study, we showed that normal human epidermal keratinocytes (NHEKs) spontaneously and systematically escape from senescence to give rise to pre-neoplastic emerging cells.
Methods
Here, this model was used to analyze the gene expression profile associated with the early steps of age-related cell transformation. We compared the gene expression profiles of growing or senescent NHEKs to post-senescent emerging cells. Data analyses were performed by using the linear modeling features of the limma package, resulting in a two-sided t test or F-test based on moderated statistics. The p-values were adjusted for multiple testing by controlling the false discovery rate according to Benjamini Hochberg method.
The common gene set resulting of differential gene expression profiles from these two comparisons revealed a post-senescence neoplastic emergence (PSNE) gene signature of 286 genes.
Results
About half of these genes were already reported as involved in cancer or premalignant skin diseases. However, bioinformatics analyses did not highlight inside this signature canonical cancer pathways but metabolic pathways, including in first line the metabolism of xenobiotics by cytochrome P450. In order to validate the relevance of this signature as a signature of pretransformation by senescence evasion, we invalidated two components of the metabolism of xenobiotics by cytochrome P450, AKR1C2 and AKR1C3. When performed at the beginning of the senescence plateau, this invalidation did not alter the senescent state itself but significantly decreased the frequency of PSNE. Conversely, overexpression of AKR1C2 but not AKR1C3 increased the frequency of PSNE.
Conclusions
To our knowledge, this study is the first to identify reprogrammation of metabolic pathways in normal keratinocytes as a potential determinant of the switch from senescence to pre-transformation.
Type de document :
Article dans une revue
Molecular Cancer, BioMed Central, 2014, 13 (1), pp.151. 〈10.1186/1476-4598-13-151〉
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https://hal.inria.fr/hal-01011012
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Soumis le : dimanche 22 juin 2014 - 01:07:02
Dernière modification le : jeudi 11 janvier 2018 - 06:23:17

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Nathalie Martin, Clara Salazar-Cardozo, Chantal Vercamer, Louise Ott, Guillemette Marot, et al.. Identification of a gene signature of a pre-transformation process by senescence evasion in normal human epidermal keratinocytes. Molecular Cancer, BioMed Central, 2014, 13 (1), pp.151. 〈10.1186/1476-4598-13-151〉. 〈hal-01011012〉

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