I. Sillitoe, A. L. Cuff, B. H. Dessailly, N. L. Dawson, N. Furnham et al., New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures, Nucleic Acids Research, vol.41, issue.D1, pp.490-498, 2013.
DOI : 10.1093/nar/gks1211

N. K. Fox, S. E. Brenner, and J. M. Chandonia, SCOPe: Structural Classification of Proteins???extended, integrating SCOP and ASTRAL data and classification of new structures, Nucleic Acids Research, vol.42, issue.D1, pp.304-309, 2014.
DOI : 10.1093/nar/gkt1240

T. Yokomori, N. Ishida, and S. Kobayashi, Learning local languages and its application to protein /spl alpha/-chain identification, Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences HICSS-94, pp.113-122, 1994.
DOI : 10.1109/HICSS.1994.323560

P. Peris, D. López, M. Campos, and J. M. Sempere, Protein Motif Prediction by Grammatical Inference, Lecture Notes in Computer Science, vol.4201, pp.175-187, 2006.
DOI : 10.1007/11872436_15

P. Peris, D. López, and M. Campos, IgTM: An algorithm to predict transmembrane domains and topology in proteins, BMC Bioinformatics, vol.9, issue.1, 2008.
DOI : 10.1186/1471-2105-9-367

G. Kerbellec, Apprentissage d'automates modélisant des familles de séquences protéiques, Université Rennes, vol.1, 2008.

J. Wang, J. Liang, and Y. Qian, Closed-Label Concept Lattice Based Rule Extraction Approach
DOI : 10.1007/978-3-642-59830-2

L. Kovacs, Generating decision tree from lattice for classification, 7th International Conference on Applied Informatics, pp.377-384, 2007.

M. Sahami, Learning classification rules using lattices (Extended abstract), Lecture Notes in Computer Science, vol.912, pp.343-346, 1995.
DOI : 10.1007/3-540-59286-5_83

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=

M. Ikeda and A. Yamamoto, Classification by Selecting Plausible Formal Concepts in a Concept Lattice, Formal Concept Analysis meets Information Retrieval, pp.22-35, 2013.

S. Busygin, O. Prokopyev, and P. M. Pardalos, Biclustering in data mining, Computers & Operations Research, vol.35, issue.9, pp.2964-2987, 2008.
DOI : 10.1016/j.cor.2007.01.005

B. Gaume, E. Navarro, and H. Prade, Clustering bipartite graphs in terms of approximate formal concepts and sub-contexts, International Journal of Computational Intelligence Systems, vol.6, issue.6, pp.1125-1142, 2013.
DOI : 10.1080/18756891.2013.819179

URL : https://hal.archives-ouvertes.fr/hal-01127983

E. Navarro, H. Prade, and B. Gaume, Clustering Sets of Objects Using Concepts-Objects Bipartite Graphs, Lecture Notes in Computer Science, vol.7520, pp.420-432, 2012.
DOI : 10.1007/978-3-642-33362-0_32

URL : https://hal.archives-ouvertes.fr/hal-00992046

G. Brewka, T. Eiter, and M. Truszczy´nskitruszczy´nski, Answer set programming at a glance, Communications of the ACM, vol.54, issue.12, pp.92-103, 2011.
DOI : 10.1145/2043174.2043195

M. Gebser, B. Kaufmann, and T. Schaub, Conflict-driven answer set solving: From theory to practice, Artificial Intelligence, vol.187, issue.188, pp.52-89, 2012.
DOI : 10.1016/j.artint.2012.04.001

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=

E. Kuznetsova, M. Proudfoot, C. F. Gonzalez, G. Brown, M. V. Omelchenko et al., Genome-wide Analysis of Substrate Specificities of the Escherichia coli Haloacid Dehalogenase-like Phosphatase Family, Journal of Biological Chemistry, vol.281, issue.47, pp.36149-36161, 2006.
DOI : 10.1074/jbc.M605449200

A. Seifried, J. Schultz, and A. Gohla, Human HAD phosphatases: structure, mechanism, and roles in health and disease, FEBS Journal, vol.14, issue.Pt 2, pp.549-571, 2013.
DOI : 10.1111/j.1742-4658.2012.08633.x

E. V. Koonin and R. L. Tatusov, Computer Analysis of Bacterial Haloacid Dehalogenases Defines a Large Superfamily of Hydrolases with Diverse Specificity, Journal of Molecular Biology, vol.244, issue.1, pp.125-132, 1994.
DOI : 10.1006/jmbi.1994.1711

A. M. Burroughs, K. N. Allen, D. Dunaway-mariano, and L. Aravind, Evolutionary Genomics of the HAD Superfamily: Understanding the Structural Adaptations and Catalytic Diversity in a Superfamily of Phosphoesterases and Allied Enzymes, Journal of Molecular Biology, vol.361, issue.5, pp.1003-1034, 2006.
DOI : 10.1016/j.jmb.2006.06.049

D. B. Janssen, Biocatalysis by Dehalogenating Enzymes, Advances in Applied Microbiology, vol.61, pp.233-252, 2007.
DOI : 10.1016/S0065-2164(06)61006-X

M. Cock, J. Sterck, L. Rouzé, P. Scornet, D. Allen et al., The Ectocarpus genome and the independent evolution of multicellularity in brown algae, Nature, vol.10, issue.7298, pp.617-621, 2010.
DOI : 10.1038/nature09016

URL : https://hal.archives-ouvertes.fr/cea-00906990