Three-level representation of metabolic networks

Anna Zhukova 1, 2 David James Sherman 1
1 MAGNOME - Models and Algorithms for the Genome
Inria Bordeaux - Sud-Ouest, UB - Université de Bordeaux, CNRS - Centre National de la Recherche Scientifique : UMR5800
Abstract : The complexity of genome-scale metabolic models makes them quite difficult for human users to read, since they contain thousands of reactions that must be included for accurate computer simulation. The web-based navigation system Mimoza allows a human expert to explore metabolic network models in a semantically zoomable manner: The most general view represents the compartments of the model; the next view shows the generalized versions of reactions and metabolites in each compartment; and the most detailed view represents the initial network with the generalization-based layout (where similar metabolites and reactions are placed next to each other). It allows a human expert to grasp the general structure of the network and analyze it in a top-down manner.
Type de document :
Poster
Journées EDMI, Nov 2014, LaBRI, Bordeaux, France
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https://hal.inria.fr/hal-01081711
Contributeur : Anna Zhukova <>
Soumis le : lundi 10 novembre 2014 - 16:05:50
Dernière modification le : jeudi 11 janvier 2018 - 06:22:12
Document(s) archivé(s) le : mercredi 11 février 2015 - 15:37:41

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Zhukova_poster.pdf
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  • HAL Id : hal-01081711, version 1

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Anna Zhukova, David James Sherman. Three-level representation of metabolic networks. Journées EDMI, Nov 2014, LaBRI, Bordeaux, France. 〈hal-01081711〉

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