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Poster communications

Three-level representation of metabolic networks

Anna Zhukova 1, 2 David James Sherman 1
1 MAGNOME - Models and Algorithms for the Genome
Inria Bordeaux - Sud-Ouest, UB - Université de Bordeaux, CNRS - Centre National de la Recherche Scientifique : UMR5800
Abstract : The complexity of genome-scale metabolic models makes them quite difficult for human users to read, since they contain thousands of reactions that must be included for accurate computer simulation. The web-based navigation system Mimoza allows a human expert to explore metabolic network models in a semantically zoomable manner: The most general view represents the compartments of the model; the next view shows the generalized versions of reactions and metabolites in each compartment; and the most detailed view represents the initial network with the generalization-based layout (where similar metabolites and reactions are placed next to each other). It allows a human expert to grasp the general structure of the network and analyze it in a top-down manner.
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Poster communications
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https://hal.inria.fr/hal-01081711
Contributor : Anna Zhukova <>
Submitted on : Monday, November 10, 2014 - 4:05:50 PM
Last modification on : Thursday, February 11, 2021 - 2:54:03 PM
Long-term archiving on: : Wednesday, February 11, 2015 - 3:37:41 PM

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  • HAL Id : hal-01081711, version 1

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Anna Zhukova, David James Sherman. Three-level representation of metabolic networks. Journées EDMI, Nov 2014, Bordeaux, France. ⟨hal-01081711⟩

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