Cyclic AMP in prokaryotes, Microbiological reviews, vol.56, issue.1, pp.100-122, 1992. ,
Etude de modèles de réseau de régulation génique, 2005. ,
Piecewise-linear Models of Genetic Regulatory Networks: Equilibria and their Stability, Journal of Mathematical Biology, vol.52, issue.1, pp.27-56, 2006. ,
DOI : 10.1007/s00285-005-0338-2
URL : https://hal.archives-ouvertes.fr/inria-00071250
Algorithmic study on genetic regulatory networks Automatic control and computer science faculty, 2006. ,
Modeling and simulation of genetic regulatory systems: a literature review, J. Comput. Biol, vol.9, pp.67-103, 2002. ,
Genetic Network Analyzer: qualitative simulation of genetic regulatory networks, Bioinformatics, vol.19, issue.3, pp.336-344, 2003. ,
DOI : 10.1093/bioinformatics/btf851
URL : https://hal.archives-ouvertes.fr/inria-00072325
Qualitative simulation of genetic regulatory networks using piecewise-linear models, Bull. Math. Biol, vol.6, pp.301-340, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00173849
How to control a biological switch: a mathematical framework for the control of piecewise affine models of gene networks, Research Report, vol.5979, 2006. ,
URL : https://hal.archives-ouvertes.fr/inria-00094853
Periodic solutions of piecewise affine gene network models: the case of a negative feedback loop, Research Report, vol.6018, 2006. ,
URL : https://hal.archives-ouvertes.fr/inria-00112195
Differential Equations with Discontinuous Righthand Sides, 1988. ,
DOI : 10.1007/978-94-015-7793-9
Symbolic reachable set computation of piecewise affine hybrid automata and its application to biological modelling: Delta-Notch protein signalling, Systems Biology, vol.1, issue.1, pp.170-183, 2004. ,
DOI : 10.1049/sb:20045019
The logical analysis of continuous, non-linear biochemical control networks, Journal of Theoretical Biology, vol.39, issue.1, pp.103-129, 1973. ,
DOI : 10.1016/0022-5193(73)90208-7
A class of piecewise linear differential equations arising in biological models, Dynamical Systems, vol.17, issue.4, pp.299-316, 2002. ,
DOI : 10.1080/1468936021000041681
A control problem for affine dynamical systems on a full-dimensional polytope, Automatica, vol.40, issue.1, pp.21-35, 2004. ,
DOI : 10.1016/j.automatica.2003.08.001
System Reduction of Nonlinear Positive Systems by Linearization and Truncation, Positive systems -Proceedings of the Second Multidisciplinary Symposium on Positive Systems: Theory and Applications, pp.431-438, 2006. ,
DOI : 10.1007/3-540-34774-7_55
Allosteric regulation of the cAMP receptor protein, Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, vol.1547, issue.1, pp.1-17, 2001. ,
DOI : 10.1016/S0167-4838(01)00187-X
Design and implementation of a qualitative simulation model of lambda phage infection, Bioinformatics, vol.14, issue.1, pp.81-91, 1998. ,
DOI : 10.1093/bioinformatics/14.1.81
The general stress response in Escherichia coli, Bacterial Stress Responses, pp.161-177, 2000. ,
Morphological and physiological changes during stationary phase, Escherichia coli and Salmonella: Cellular and Molecular Biology, pp.1672-1682 ,
The Origins of Order: Self-Organization and Selection in Evolution, 1993. ,
Model reduction of modular systems using balancing methods, 2003. ,
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber, Bioinformatics, vol.21, issue.7, 2005. ,
DOI : 10.1093/bioinformatics/bti145
Molecular interaction maps as information organizers and simulation guides, Chaos: An Interdisciplinary Journal of Nonlinear Science, vol.11, issue.1, pp.84-97, 2001. ,
DOI : 10.1063/1.1338126
Identifying global regulators in transcriptional regulatory networks in bacteria, Current Opinion in Microbiology, vol.6, issue.5, pp.482-489, 2003. ,
DOI : 10.1016/j.mib.2003.09.002
A mathematical framework for describing and analysing gene regulatory networks, Journal of Theoretical Biology, vol.176, issue.2, pp.291-300, 1995. ,
DOI : 10.1006/jtbi.1995.0199
A Genetic Switch: Phage ? and Higher Organisms, Cell Press & Blackwell Science, 1992. ,
Qualitative analysis of biochemical reaction systems, Computers in Biology and Medicine, vol.26, issue.1, pp.9-24, 1996. ,
DOI : 10.1016/0010-4825(95)00042-9
Representation and simulation of biochemical processes using the ??-calculus process algebra, Biocomputing 2001, pp.459-470, 2001. ,
DOI : 10.1142/9789814447362_0045
Qualitative simulation of the carbon starvation response in Escherichia coli, Biosystems, vol.84, issue.2, pp.124-152, 2006. ,
DOI : 10.1016/j.biosystems.2005.10.005
URL : https://hal.archives-ouvertes.fr/hal-00171698
Biological Feedback, 1990. ,
URL : https://hal.archives-ouvertes.fr/hal-00087681
Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification, Journal of Biotechnology, vol.92, issue.2, pp.133-158, 2001. ,
DOI : 10.1016/S0168-1656(01)00354-6
Molecular Components of Physiological Stress Responses in Escherichia coli, Advances in Biochemical EngineeringBiotechnology, vol.89, pp.1-45, 2004. ,
DOI : 10.1007/b93957