P. Rice, I. Longden, and A. Bleasby, EMBOSS: The European Molecular Biology Open Software Suite, Trends in Genetics, vol.16, issue.6, pp.276-277, 2000.
DOI : 10.1016/S0168-9525(00)02024-2

G. Kucherov and M. Rusinowitch, Matching a set of strings with variable length don't cares, pp.230-247, 1995.

G. Navarro, NR-grep : a fast and flexible pattern-matching tool. Software : Practice and Experience, pp.311265-1312, 2001.

J. Schug and G. Overton, TESS : Transcription Element Search Software, 1997.

J. Turatsinze, M. Thomas-chollier, M. Defrance, and J. Van-helden, Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules, Nature Protocols, vol.281, issue.10, pp.1578-1588, 2008.
DOI : 10.1038/nprot.2008.97

A. T. Kwon, D. J. Arenillas, R. W. Hunt, and W. W. Wasserman, oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets, G3 (Bethesda, Md.), pp.987-1002, 2012.
DOI : 10.1534/g3.112.003202

P. Muzátko, Approximate Regular Expression Matching, Stringology, pp.37-41, 1996.

O. Demeure, F. Lecerf, C. Duby, C. Desert, S. Ducheix et al., Regulation of LPCAT3 by LXR, Gene, vol.470, issue.1-2, pp.7-11, 2011.
DOI : 10.1016/j.gene.2010.09.002

URL : https://hal.archives-ouvertes.fr/hal-00729271

A. Mathelier and W. W. Wasserman, The Next Generation of Transcription Factor Binding Site Prediction, PLoS Computational Biology, vol.25, issue.Database issue, 1997.
DOI : 10.1371/journal.pcbi.1003214.s016

E. W. Myers and W. Miller, Approximate matching of regular expressions, Bulletin of Mathematical Biology, vol.20, issue.1, pp.5-37, 1989.
DOI : 10.1007/BF02458834