P. Røgen and B. Fain, Automatic classification of protein structure by using Gauss integrals, Proceedings of the National Academy of Sciences, vol.100, issue.1, pp.119-143, 2003.
DOI : 10.1073/pnas.2636460100

P. Koehl, Protein structure similarities, Current Opinion in Structural Biology, vol.11, issue.3, pp.348-53, 2001.
DOI : 10.1016/S0959-440X(00)00214-1

L. Holm and J. Park, DaliLite workbench for protein structure comparison, Bioinformatics, vol.16, issue.6, pp.566-573, 2000.
DOI : 10.1093/bioinformatics/16.6.566

A. Jain, Fundamentals of Digital Image Processing, 1989.

J. Cooley and J. Tukey, An algorithm for the machine calculation of complex Fourier series, Mathematics of Computation, vol.19, issue.90, pp.297-301, 1965.
DOI : 10.1090/S0025-5718-1965-0178586-1

F. Guyon and P. Tufféry, Assessing 3D scores for protein structure fragment mining, Open Access Bioinforma, vol.2, pp.67-77, 2010.

S. Minami, K. Sawada, and G. Chikenji, MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C?? only models, Alternative alignments, and Non-sequential alignments, BMC Bioinformatics, vol.14, issue.1, p.24, 2013.
DOI : 10.1016/j.jmb.2005.12.084

K. Makarova and N. Grishin, Thermolysin and mitochondrial processing peptidase: how far structure-functional convergence goes, Protein Sci, vol.8, issue.11, pp.2537-2577, 1999.

R. George and J. Heringa, An analysis of protein domain linkers: their classification and role in protein folding, Protein Engineering Design and Selection, vol.15, issue.11, pp.871-880, 2002.
DOI : 10.1093/protein/15.11.871

G. Lancia, R. Carr, B. Walenz, and S. Istrail, 101 optimal PDB structure alignments, Proceedings of the fifth annual international conference on Computational biology , RECOMB '01, 2001193.
DOI : 10.1145/369133.369199

C. Sigrist, E. Castro, L. Cerutti, B. Cuche, N. Hulo et al., New and continuing developments at PROSITE, Nucleic Acids Research, vol.41, issue.D1, pp.344-351, 2013.
DOI : 10.1093/nar/gks1067
URL : http://doi.org/10.1093/nar/gks1067

J. Chandonia, G. Hon, N. Walker, L. Conte, L. Koehl et al., The ASTRAL Compendium in 2004, Nucleic Acids Research, vol.32, issue.90001, pp.189-92, 2004.
DOI : 10.1093/nar/gkh034

J. Dunbar, K. Krawczyk, J. Leem, T. Baker, A. Fuchs et al., SAbDab: the structural antibody database, Nucleic Acids Research, vol.42, issue.D1, pp.1140-1146, 2014.
DOI : 10.1093/nar/gkt1043

J. Davis and M. Goadrich, The relationship between Precision-Recall and ROC curves, Proceedings of the 23rd international conference on Machine learning , ICML '06, pp.233-273, 2006.
DOI : 10.1145/1143844.1143874

B. North, A. Lehmann, and R. Jr, A New Clustering of Antibody CDR Loop Conformations, Journal of Molecular Biology, vol.406, issue.2, pp.228-56, 2011.
DOI : 10.1016/j.jmb.2010.10.030

D. Davies and D. Bouldin, A Cluster Separation Measure, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.1, issue.2, pp.224-231, 1979.
DOI : 10.1109/TPAMI.1979.4766909