A. Abraham, E. P. Rocha, and J. Pothier, Swelfe: a detector of internal repeats in sequences and structures, Bioinformatics, vol.24, issue.13, pp.241536-241543, 2008.
DOI : 10.1093/bioinformatics/btn234
URL : https://hal.archives-ouvertes.fr/pasteur-00336123

R. Andonov, N. Malod-dognin, and N. Yanev, Maximum Contact Map Overlap Revisited, Journal of Computational Biology, vol.18, issue.1, pp.27-41, 2011.
DOI : 10.1089/cmb.2009.0196
URL : https://hal.archives-ouvertes.fr/inria-00536624

M. A. Andrade, C. Perez-iratxeta, and C. P. Ponting, Protein Repeats: Structures, Functions, and Evolution, Journal of Structural Biology, vol.134, issue.2-3, pp.117-148, 2001.
DOI : 10.1006/jsbi.2001.4392

B. Chakrabarty and N. Parekh, PRIGSA: Protein repeat identification by graph spectral analysis, Journal of Bioinformatics and Computational Biology, vol.12, issue.06, p.1442009, 2014.
DOI : 10.1142/S0219720014420098

G. Chapuis, M. L. Boudic-jamin, R. Andonov, H. Djidjev, and D. Lavenier, Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection, Scientific Programming, 2014.
DOI : 10.1186/1748-7188-5-12
URL : https://hal.archives-ouvertes.fr/hal-01093809

R. A. George and J. Heringa, The REPRO server: finding protein internal sequence repeats through the Web, Trends in Biochemical Sciences, vol.25, issue.10, pp.515-517, 2000.
DOI : 10.1016/S0968-0004(00)01643-1

T. Hrabe and A. Godzik, ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures, BMC Bioinformatics, vol.15, issue.1, p.119, 2014.
DOI : 10.1038/35100529

J. Jorda and A. V. Kajava, T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm, Bioinformatics, vol.25, issue.20, pp.252632-252640, 2009.
DOI : 10.1093/bioinformatics/btp482
URL : https://hal.archives-ouvertes.fr/hal-00423755

H. Kao, W. Tzou, Y. Hsu, C. Chen, and T. Pai, IRIS : Internal Repeat Identification System, 2009.

B. Kobe and A. V. Kajava, When protein folding is simplified to protein coiling: the continuum of solenoid protein structures, Trends in Biochemical Sciences, vol.25, issue.10, pp.509-515, 2000.
DOI : 10.1016/S0968-0004(00)01667-4

E. M. Marcotte, M. Pellegrini, T. O. Yeates, and D. Eisenberg, A census of protein repeats, Journal of Molecular Biology, vol.293, issue.1, pp.151-60, 1999.
DOI : 10.1006/jmbi.1999.3136

S. Minami, K. Sawada, and G. Chikenji, MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C?? only models, Alternative alignments, and Non-sequential alignments, BMC Bioinformatics, vol.14, issue.1, p.24, 2013.
DOI : 10.1016/j.jmb.2005.12.084

K. B. Murray, W. R. Taylor, and J. M. Thornton, Toward the detection and validation of repeats in protein structure, Proteins: Structure, Function, and Bioinformatics, vol.97, issue.2, pp.365-80, 2004.
DOI : 10.1002/prot.20202

S. Niskanen and P. R. Östergård, Cliquer User's Guide, Version 1.0, 2003.

R. G. Parra, R. Espada, I. E. Sánchez, M. J. Sippl, and D. U. Ferreiro, Detecting Repetitions and Periodicities in Proteins by Tiling the Structural Space, The Journal of Physical Chemistry B, vol.117, issue.42, pp.12887-97, 2013.
DOI : 10.1021/jp402105j

C. Sander and R. Schneider, Database of homology-derived protein structures and the structural meaning of sequence alignment, Proteins: Structure, Function, and Genetics, vol.4, issue.1, pp.56-68, 1991.
DOI : 10.1002/prot.340090107

Y. Zhang and J. Skolnick, TM-align: a protein structure alignment algorithm based on the TM-score, Nucleic Acids Research, vol.33, issue.7, pp.2302-2309, 2005.
DOI : 10.1093/nar/gki524