An intracellular partitioning-based framework for tissue cell polarity in plants and animals, Development, issue.10, pp.1402061-2074, 2013. ,
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster, Journal of Theoretical Biology, vol.223, issue.1, pp.1-18, 2003. ,
DOI : 10.1016/S0022-5193(03)00035-3
A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution, PLoS Computational Biology, vol.125, issue.1, pp.1003950-1003966, 2015. ,
DOI : 10.1371/journal.pcbi.1003950.s021
Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis, Proceedings of the National Academy of Sciences, pp.1627-1632, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00023247
Auxin influx carriers stabilize phyllotactic patterning, Genes & Development, vol.22, issue.6, pp.810-823, 2008. ,
DOI : 10.1101/gad.462608
Gibberellins promote flowering of arabidopsis by activating the LEAFY promoter. The Plant cell, pp.791-800, 1998. ,
Stress and Strain Provide Positional and Directional Cues in Development, PLoS Computational Biology, vol.109, issue.1, p.1003410, 2014. ,
DOI : 10.1371/journal.pcbi.1003410.s010
Mechano-Chemical Aspects of Organ Formation in Arabidopsis thaliana: The Relationship between Auxin and Pectin, PloS one, vol.8, issue.3, p.57813, 2013. ,
Przemyslaw Prusinkiewicz, Miltos Tsiantis, and R A. Model for the regulation of Arabidopsis thaliana leaf margin development, Proceedings of the National Academy of Sciences, pp.3424-3429, 2011. ,
Genetic interactions among floral homeotic genes of Arabidopsis, Development, vol.112, issue.1, pp.1-20, 1991. ,
Integration of transport-based models for phyllotaxis and midvein formation, Genes & Development, vol.23, issue.3, pp.373-384, 2009. ,
DOI : 10.1101/gad.497009
Cytokinin signaling as a positional cue for patterning the apical-basal axis of the growing Arabidopsis shoot meristem, Proceedings of the National Academy of Sciences of the United States of America, 2012. ,
Floral meristem initiation and emergence in plants, Cellular and Molecular Life Sciences, vol.131, issue.22, pp.3807-3818, 2012. ,
DOI : 10.1007/s00018-012-0999-0
The war of the whorls: genetic interactions controlling flower development, Nature, vol.353, issue.6339, pp.31-37, 1991. ,
DOI : 10.1038/353031a0
An Arabidopsis F-box protein acts as a transcriptional co-factor to regulate floral development, Development, vol.135, issue.7, pp.1235-1245, 2008. ,
DOI : 10.1242/dev.015842
Modeling and simulation of genetic regulatory systems: a literature review, Journal of computational biology : a journal of computational molecular cell biology, vol.9, issue.1, pp.67-103, 2002. ,
Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. The Plant cell, pp.3493-3505, 2009. ,
An auxin-driven polarized transport model for phyllotaxis, Proceedings of the National Academy of Sciences, pp.1633-1638, 2006. ,
DOI : 10.1073/pnas.0509839103
Interlocking feedback loops govern the dynamic behavior of the floral transition in Arabidopsis. The Plant cell, pp.820-833, 2013. ,
Homeostasis and Differentiation in Random Genetic Control Networks, Nature, vol.217, issue.5215, pp.177-178, 1969. ,
DOI : 10.1038/224177a0
Auxin transport: a field in flux, Trends in Plant Science, vol.11, issue.8, pp.382-386, 2006. ,
Modeling Auxin-regulated Development . Cold Spring Harbor Perspectives in, 2010. ,
PIN and AUX/LAX proteins: their role in auxin accumulation, Trends in Plant Science, vol.9, issue.12, pp.578-582, 2004. ,
Orchestration of Floral Initiation by APETALA1, Science, vol.328, issue.5974, pp.32885-89, 2010. ,
DOI : 10.1126/science.1185244
Termination of Stem Cell Maintenance in Arabidopsis Floral Meristems by Interactions between WUSCHEL and AGAMOUS, Cell, vol.105, issue.6, pp.805-814, 2001. ,
DOI : 10.1016/S0092-8674(01)00390-7
Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis, Development, vol.135, issue.8, pp.1351481-1491, 2008. ,
DOI : 10.1242/dev.020255
Interactions among APETALA1, LEAFY, and TERMINAL FLOWER1 specify meristem fate. The Plant cell, pp.1007-1018, 1999. ,
A Molecular Link between Stem Cell Regulation and Floral Patterning in Arabidopsis, Cell, vol.105, issue.6, pp.793-803, 2001. ,
DOI : 10.1016/S0092-8674(01)00384-1
A Conserved Genetic Pathway Determines Inflorescence Architecture in Arabidopsis and Rice, Developmental Cell, vol.24, issue.6, pp.612-622, 2013. ,
DOI : 10.1016/j.devcel.2013.02.013
Coming into bloom: the specification of floral meristems, Development, vol.136, issue.20, pp.3379-3391, 2009. ,
DOI : 10.1242/dev.033076
Specification of Arabidopsis floral meristem identity by repression of flowering time genes, Development, vol.134, issue.10, pp.1341901-1910, 2007. ,
DOI : 10.1242/dev.003103
LEAFY Controls Auxin Response Pathways in Floral Primordium Formation, Science Signaling, vol.6, issue.270, p.23, 2013. ,
DOI : 10.1126/scisignal.2003937
Dynamics of the Genetic Regulatory Network forArabidopsis thalianaFlower Morphogenesis, Journal of Theoretical Biology, vol.193, issue.2, pp.307-319, 1998. ,
DOI : 10.1006/jtbi.1998.0701
Molecular characterization of the Arabidopsis floral homeotic gene APETALA1, Nature, vol.360, issue.6401, pp.273-277, 1992. ,
DOI : 10.1038/360273a0
A Model for Vein Formation in Higher Plants, Proceedings of the Royal Society B: Biological Sciences, vol.207, issue.1166, pp.79-109, 1980. ,
DOI : 10.1098/rspb.1980.0015
The Polar Transport of Auxin and Vein Patterns in Plants [and Discussion], Philosophical Transactions of the Royal Society B: Biological Sciences, vol.295, issue.1078, pp.461-471, 1981. ,
DOI : 10.1098/rstb.1981.0154
Role of WUSCHEL in Regulating Stem Cell Fate in the Arabidopsis Shoot Meristem, Cell, vol.95, issue.6, pp.95805-815, 1998. ,
DOI : 10.1016/S0092-8674(00)81703-1
Pectin-Induced Changes in Cell Wall Mechanics Underlie Organ Initiation in Arabidopsis, Current Biology, vol.21, issue.20, pp.1720-1726, 2011. ,
DOI : 10.1016/j.cub.2011.08.057
Control of bud activation by an auxin transport switch, Proceedings of the National Academy of Sciences, vol.106, issue.41, pp.17431-17436, 2009. ,
DOI : 10.1073/pnas.0906696106
B and C floral organ identity functions require SEPALLATA MADS-box genes, Nature, vol.405, issue.6783, pp.405200-203, 2000. ,
DOI : 10.1038/35012103
TRANSPORT OF INDOLEACETIC ACID IN PLANT CELLS IN RELATION TO pH AND ELECTRICAL POTENTIAL GRADIENTS, AND ITS SIGNIFICANCE FOR POLAR IAA TRANSPORT, New Phytologist, vol.49, issue.2, pp.163-172, 1975. ,
DOI : 10.1146/annurev.pp.18.060167.002205
A common mechanism controls the life cycle and architecture of plants, Development, vol.125, issue.9, pp.1609-1615, 1998. ,
Separation of shoot and floral identity in Arabidopsis, pp.1109-1120, 1999. ,
Modeling and visualization of leaf venation patterns, ACM Transactions on Graphics, vol.24, issue.3, pp.702-711, 2005. ,
DOI : 10.1145/1073204.1073251
Reviewing models of auxin canalization in the context of leaf vein pattern formation in Arabidopsis. The Plant journal : for cell and molecular biology, pp.854-865, 2005. ,
Auxin Regulates the Initiation and Radial Position of Plant Lateral Organs. The Plant cell, pp.507-518, 2000. ,
Regulation of phyllotaxis by polar auxin transport, Nature, vol.426, issue.6964, pp.426255-260, 2003. ,
DOI : 10.1038/nature02081
Carrier-mediated auxin transport, Planta, vol.16, issue.2, pp.101-121, 1974. ,
DOI : 10.1007/BF00388387
Computational Modelsof Auxin-Driven Development, Auxin and Its Role in Plant Development, pp.315-357, 2014. ,
An Auxin-Mediated Shift toward Growth Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis, Current Biology, vol.24, issue.19, pp.242335-2342, 2014. ,
DOI : 10.1016/j.cub.2014.08.036
URL : https://hal.archives-ouvertes.fr/hal-01074821
Polarity and the Induction of Organized Vascular Tissues, Annals of Botany, vol.33, issue.2, pp.263-275, 1969. ,
DOI : 10.1093/oxfordjournals.aob.a084281
A possible basis for apical organization in plants, Journal of Theoretical Biology, vol.37, issue.2, pp.353-361, 1972. ,
DOI : 10.1016/0022-5193(72)90028-8
Integrating cellular and organismic aspects of vascular differentiation . Plant and cell physiology, pp.649-656, 2000. ,
Parameter estimation using meta-heuristics in systems biology: a comprehensive review, IEEE/ACM transactions on computational biology and bioinformatics IEEE, ACM, vol.9, issue.1, pp.185-202, 2012. ,
A plausible model of phyllotaxis, Proceedings of the National Academy of Sciences, vol.103, issue.5, pp.1301-1306, 2006. ,
DOI : 10.1073/pnas.0510457103
Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development, PLoS computational biology, vol.4, issue.10, p.1000207, 2008. ,
The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes, Cell, vol.100, issue.6, pp.635-644, 2000. ,
Control of leaf vascular patterning by polar auxin transport, Genes & Development, vol.20, issue.8, pp.1015-1027, 2006. ,
DOI : 10.1101/gad.1402406
Regulated transport as a mechanism for pattern generation: Capabilities for phyllotaxis and beyond, Journal of Theoretical Biology, vol.258, issue.1, pp.60-70, 2009. ,
DOI : 10.1016/j.jtbi.2009.01.019
URL : https://hal.archives-ouvertes.fr/hal-00554566
Polar auxin transport: models and mechanisms, Development, vol.140, issue.11, pp.2253-2268, 2013. ,
DOI : 10.1242/dev.079111
The auxin signalling network translates dynamic input into robust patterning at the shoot apex, Molecular Systems Biology, vol.127, issue.1, p.508, 2011. ,
DOI : 10.1242/dev.054973
URL : https://hal.archives-ouvertes.fr/hal-00828880
Continuous-time modeling of cell fate determination in Arabidopsis flowers, BMC Systems Biology, vol.4, issue.1, pp.101-101, 2010. ,
DOI : 10.1186/1752-0509-4-101
LEAFY Target Genes Reveal Floral Regulatory Logic, cis Motifs, and a Link to Biotic Stimulus Response, Developmental Cell, vol.20, issue.4, pp.430-443, 2011. ,
DOI : 10.1016/j.devcel.2011.03.019
URL : https://hal.archives-ouvertes.fr/hal-00606366
LEAFY controls floral meristem identity in Arabidopsis, Cell, vol.69, issue.5, pp.843-859, 1992. ,
DOI : 10.1016/0092-8674(92)90295-N
The Flux-Based PIN Allocation Mechanism Can Generate Either Canalyzed or Diffuse Distribution Patterns Depending on Geometry and Boundary Conditions, PLoS ONE, vol.103, issue.1, p.54802, 2013. ,
DOI : 10.1371/journal.pone.0054802.s002
URL : https://hal.archives-ouvertes.fr/hal-00850845
Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling, Molecular Systems Biology, vol.9, p.447, 2010. ,
DOI : 10.1126/science.1121356
WUSCHEL mediates stem cell homeostasis by regulating stem cell number and patterns of cell division and differentiation of stem cell progenitors, Development, vol.137, issue.21, pp.3581-3589, 2010. ,
DOI : 10.1242/dev.054973
A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia, Developmental Cell, vol.24, issue.3, pp.271-282, 2013. ,
DOI : 10.1016/j.devcel.2012.12.017