TiQuant: software for tissue analysis, quantification and surface reconstruction

Adrian Friebel 1 Johannes Neitsch 1 Tim Johann 1 Seddik Hammad 2, 3 Dirk Drasdo 4, 1 Stefan Hoehme 1
1 IZBI - Interdisciplinary Centre for Bioinformatics [Leipzig]
2 Department of Forensic Medicine and Veterinary Toxicology [Qena]
3 IFADO - Leibniz Research Centre for Working Environment and Human Factors [Dortmund]
4 MAMBA - Modelling and Analysis for Medical and Biological Applications
LJLL - Laboratoire Jacques-Louis Lions, Inria Paris-Rocquencourt
Abstract : ABSTRACT Motivation: TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology. Availability: TiQuant is freely available for non-commercial use at msysbio.com/tiquant. Windows, OSX and Linux are supported. Contact: hoehme@uni-leipzig.de Supplementary information: Supplementary data are available at Bioinformatics online.
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Journal articles
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https://hal.inria.fr/hal-01257137
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Submitted on : Friday, January 15, 2016 - 5:52:52 PM
Last modification on : Thursday, July 11, 2019 - 1:20:15 AM

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Adrian Friebel, Johannes Neitsch, Tim Johann, Seddik Hammad, Dirk Drasdo, et al.. TiQuant: software for tissue analysis, quantification and surface reconstruction. Bioinformatics, Oxford University Press (OUP), 2015, 31 (19), pp.3234-3236. ⟨10.1093/bioinformatics/btv346⟩. ⟨hal-01257137⟩

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