? Classes of Graphs with Bounded TreeWidth?, 1986. ,
Treewidth computations I. Upper bounds, Information and Computation, vol.208, issue.3, pp.259-75, 2010. ,
DOI : 10.1016/j.ic.2009.03.008
Self-Splicing RNA: Implications for Evolution, International Review of Cytology, vol.93, pp.3-22, 1985. ,
DOI : 10.1016/S0074-7696(08)61370-4
Non???coding RNA genes and the modern RNA world, Nature Reviews Genetics, vol.10, issue.12, pp.919-948, 2001. ,
DOI : 10.1038/35103511
Structural Alignment of Pseudoknotted RNA, Journal of Computational Biology, vol.15, issue.5, 2008. ,
DOI : 10.1089/cmb.2007.0214
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding, In ? Algorithms in Bioinformatics? Lecture Notes in Computer Science, pp.323-357, 2007. ,
DOI : 10.1007/978-3-540-74126-8_30
RSEARCH: Finding Homologs of Single Structured RNA Sequences, 2003. ,
Pseudoknots in RNA Secondary Structures, ? Proceedings of the Fourth Annual International Conference on Computational Molecular Biology? , 201?9. RECOMB '00, 2000. ,
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures, Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference?, 2004. ,
Rfam 12.0: updates to the RNA families database, Nucleic Acids?, 2014. ,
DOI : 10.1093/nar/gku1063
Infernal 1.1: 100-fold faster RNA homology searches, Bioinformatics, vol.29, issue.22, 2013. ,
DOI : 10.1093/bioinformatics/btt509
Tree Decomposition and Parameterized Algorithms for RNA StructureSequence Alignment Including Tertiary Interactions and Pseudoknots, In ? Algorithms in Bioinformatics? Lecture Notes in Computer Science, pp.149-64, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00708580
A dynamic programming algorithm for RNA structure prediction including pseudoknots11Edited by I. Tinoco, Journal of Molecular Biology, vol.285, issue.5, pp.2053-68, 1999. ,
DOI : 10.1006/jmbi.1998.2436
The non-coding Air RNA is required for silencing autosomal imprinted genes, Nature, vol.94, issue.6873, pp.810-823, 2002. ,
DOI : 10.1038/415810a
Frequency and isostericity of RNA base pairs, Nucleic Acids Research, vol.37, issue.7, pp.2294-2312, 2009. ,
DOI : 10.1093/nar/gkp011
URL : https://hal.archives-ouvertes.fr/hal-00484475
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots, Nucleic Acids?, 2009. ,
DOI : 10.1093/nar/gkn806
Detection of NonCoding RNAs on the Basis of Predicted Secondary Structure Formation Free Energy Change, BMC Bioinformatics, vol.7, issue.1, p.173, 2006. ,
DOI : 10.1186/1471-2105-7-173
Computing Treewidth with LibTW, 2006. ,
Remodelling chromatin with RNA, Nature, vol.386, issue.6622, pp.228-257, 1997. ,
DOI : 10.1038/386228a0
An Enhanced RNA Alignment Benchmark for Sequence Alignment Programs, Algorithms for Molecular Biology: AMB?, vol.1, 2006. ,
Structural Alignment of RNAs Using ProfilecsHMMs and Its Application to RNA Homology Search: Overview and New Results, Automatic Control, 2008. ,