Interactive notebooks: Sharing the code, Nature, vol.515, issue.7525, pp.151-152, 2014. ,
DOI : 10.1038/515151a
The jupyter/ipython architecture: a unified view of computational research, from interactive exploration to communication and publication, p.7 ,
DIRAC: a community grid solution, Journal of Physics: Conference Series, vol.119, issue.6, 2008. ,
DOI : 10.1088/1742-6596/119/6/062048
URL : https://hal.archives-ouvertes.fr/in2p3-00186997
Management and preservation of research data with iRODS, Proceedings of the ACM first workshop on CyberInfrastructure: information management in eScience , CIMS '07, pp.17-22 ,
DOI : 10.1145/1317353.1317358
OpenAlea: a visual programming and component-based software platform for plant modelling, Functional Plant Biology, vol.35, issue.10, pp.751-760, 2008. ,
DOI : 10.1071/FP08084
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biology, vol.11, issue.8, pp.11-86, 2010. ,
DOI : 10.1186/gb-2010-11-8-r86
On providing declarative design and programming constructs for scientific workflows based on process networks, 2003. ,
OpenAlea, Proceedings of the 27th International Conference on Scientific and Statistical Database Management, SSDBM '15, p.11 ,
DOI : 10.1145/2791347.2791365
URL : https://hal.archives-ouvertes.fr/hal-00831801
Scientific workflow systems - can one size fit all?, 2008 Cairo International Biomedical Engineering Conference, pp.1-9 ,
DOI : 10.1109/CIBEC.2008.4786077
A Lightweight Middleware for Developing P2P Applications with Component and Service-Based Principles, 2012 IEEE 15th International Conference on Computational Science and Engineering, pp.9-16 ,
DOI : 10.1109/ICCSE.2012.12
URL : https://hal.archives-ouvertes.fr/lirmm-00757105
An algebraic approach for data-centric scientific workflows, Proc. of VLDB Endowment, pp.1328-1339, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00640431
The oauth 2.0 authorization framework, 2012. ,
DOI : 10.17487/rfc6749
CDE: A Tool for Creating Portable Experimental Software Packages, Computing in Science & Engineering, vol.14, issue.4, pp.32-35, 2012. ,
DOI : 10.1109/MCSE.2012.36
Ten Simple Rules for Reproducible Computational Research, PLoS Computational Biology, vol.8, issue.10 ,
DOI : 10.1371/journal.pcbi.1003285
Prov-dm: The prov data model, 2013. ,
Matplotlib: A 2D Graphics Environment, Computing in Science & Engineering, vol.9, issue.3, pp.90-95, 2007. ,
DOI : 10.1109/MCSE.2007.55
Color image segmentation based on adaptive local thresholds, Image and Vision Computing, vol.23, issue.1, pp.69-85, 2005. ,
DOI : 10.1016/j.imavis.2004.05.011
Segmentation and histogram generation using the HSV color space for image retrieval, Proceedings. International Conference on Image Processing, p.589 ,
DOI : 10.1109/ICIP.2002.1040019
Mean shift: A robust approach toward feature space analysis, Pattern Analysis and Machine Intelligence, IEEE Transactions on, vol.24, pp.603-619, 2002. ,
A Survey of Data-Intensive Scientific Workflow Management, Journal of Grid Computing, vol.1, issue.Webserver-Issue, pp.1-37, 2015. ,
DOI : 10.1007/s10723-015-9329-8
URL : https://hal.archives-ouvertes.fr/lirmm-01144760
Cloud Computing and Grid Computing 360-Degree Compared, 2008 Grid Computing Environments Workshop, pp.1-10, 2008. ,
DOI : 10.1109/GCE.2008.4738445
A Taxonomy of Workflow Management Systems for Grid Computing, Journal of Grid Computing, vol.15, issue.5???6, pp.171-200, 2005. ,
DOI : 10.1007/s10723-005-9010-8
Workflow in grid systems, 2006. ,
Principles of distributed database systems, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00483354
Dissection and modelling of abiotic stress tolerance in plants, Current Opinion in Plant Biology, vol.13, issue.2, pp.206-212, 2010. ,
DOI : 10.1016/j.pbi.2009.12.012
Phenomics ??? technologies to relieve the phenotyping bottleneck, Trends in Plant Science, vol.16, issue.12, pp.635-644, 2011. ,
DOI : 10.1016/j.tplants.2011.09.005
Phenomics: the next challenge, Nature Reviews Genetics, vol.11, issue.113, pp.855-866, 2010. ,
DOI : 10.1038/nrg2897
Future Scenarios for Plant Phenotyping, Annual Review of Plant Biology, vol.64, issue.1, pp.267-291, 2013. ,
DOI : 10.1146/annurev-arplant-050312-120137
Cell to whole-plant phenotyping: the best is yet to come, Trends in Plant Science, vol.18, issue.8, pp.428-439, 2013. ,
DOI : 10.1016/j.tplants.2013.04.008
Taverna workflows: Syntax and semantics, in: e-Science and Grid Computing, pp.441-448 ,
Lambda calculus as a workflow model, Concurrency and Computation: Practice and Experience, vol.8, issue.1, pp.1999-2017, 2009. ,
DOI : 10.1002/cpe.1448
A functional language for large scale scientific data analysis, BeyongMR, ICDT/EDBT Workshop ,
A data-driven workflow language for grids based on array programming principles, Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, WORKS '09, p.7 ,
DOI : 10.1145/1645164.1645171
URL : https://hal.archives-ouvertes.fr/hal-00677806
Bundle and Pool Architecture for Multi-Language, Robust, Scalable Workflow Executions, Journal of Grid Computing, vol.5, issue.1, pp.457-480, 2013. ,
DOI : 10.1007/s10723-013-9267-2
URL : https://hal.archives-ouvertes.fr/hal-00832221
Search, adapt, and reuse, ACM SIGMOD Record, vol.40, issue.2, pp.6-16, 2011. ,
DOI : 10.1145/2034863.2034865
URL : https://hal.archives-ouvertes.fr/inria-00638043
Differencing Provenance in Scientific Workflows, 2009 IEEE 25th International Conference on Data Engineering, pp.808-819 ,
DOI : 10.1109/ICDE.2009.103
URL : https://hal.archives-ouvertes.fr/inria-00542336
A Protocol for Recording Provenance in Service-Oriented Grids, Principles of Distributed Systems, pp.124-139, 2005. ,
DOI : 10.1007/11516798_9
Querying and Managing Provenance through User Views in Scientific Workflows, 2008 IEEE 24th International Conference on Data Engineering, pp.1072-1081, 2008. ,
DOI : 10.1109/ICDE.2008.4497516
Distilling structure in Taverna scientific workflows: a refactoring approach, BMC Bioinformatics, vol.15, issue.Suppl 1, pp.15-27, 2014. ,
DOI : 10.1186/1471-2105-15-S1-S12
URL : https://hal.archives-ouvertes.fr/hal-00926827
Issues in building practical provenance systems, IEEE Data Eng. Bull, vol.30, pp.38-43, 2007. ,
ReproZip, Proceedings of the 2016 International Conference on Management of Data, SIGMOD '16 ,
DOI : 10.1145/2882903.2899401