H. Abbasi, G. Eisenhauer, M. Wolf, K. Schwan, and S. Klasky, Just in time, Proceedings of the 20th international symposium on High performance distributed computing, HPDC '11, pp.27-36, 2011.
DOI : 10.1145/1996130.1996137

S. Ahern, E. Brugger, B. Whitlock, J. S. Meredith, K. Biagas et al., Visit: Experiences with sustainable software. arXiv preprint, 2013.

J. Ahrens, B. Geveci, and C. Law, 36 paraview: An end-user tool for large-data visualization. The Visualization Handbook, p.717, 2005.

M. Bauer, S. Treichler, E. Slaughter, and A. Aiken, Legion: Expressing locality and independence with logical regions, 2012 International Conference for High Performance Computing, Networking, Storage and Analysis, pp.1-66
DOI : 10.1109/SC.2012.71

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.259.7715

M. Bauer, S. Treichler, E. Slaughter, and A. Aiken, Structure Slicing: Extending Logical Regions with Fields, SC14: International Conference for High Performance Computing, Networking, Storage and Analysis, pp.845-856, 2014.
DOI : 10.1109/SC.2014.74

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.463.6898

D. Boyuka, S. Lakshminarasimham, X. Zou, Z. Gong, J. Jenkins et al., Transparent in Situ Data Transformations in ADIOS, 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, pp.256-266, 2014.
DOI : 10.1109/CCGrid.2014.73

J. Dayal, D. Bratcher, G. Eisenhauer, K. Schwan, M. Wolf et al., Flexpath: Type-Based Publish/Subscribe System for Large-Scale Science Analytics, 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, pp.246-255, 2014.
DOI : 10.1109/CCGrid.2014.104

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.648.565

C. Docan, M. Parashar, and S. Klasky, DataSpaces, Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, HPDC '10, pp.163-181, 2012.
DOI : 10.1145/1851476.1851481

M. Dorier, G. Antoniu, F. Cappello, M. Snir, and L. Orf, Damaris: How to Efficiently Leverage Multicore Parallelism to Achieve Scalable, Jitter-free I/O, 2012 IEEE International Conference on Cluster Computing, 2012.
DOI : 10.1109/CLUSTER.2012.26

URL : https://hal.archives-ouvertes.fr/hal-00715252

M. Dorier, R. Sisneros, T. Roberto, G. Peterka, B. Antoniu et al., Damaris/Viz: A nonintrusive, adaptable and user-friendly in situ visualization framework, 2013 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2013.
DOI : 10.1109/LDAV.2013.6675160

URL : https://hal.archives-ouvertes.fr/hal-00859603

M. Dreher and B. Raffin, A Flexible Framework for Asynchronous in Situ and in Transit Analytics for Scientific Simulations, 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2014.
DOI : 10.1109/CCGrid.2014.92

URL : https://hal.archives-ouvertes.fr/hal-00941413

G. Eisenhauer, M. Wolf, H. Abbasi, S. Klasky, K. Schwan et al., A type system for high performance communication and computation. In Workshop on D3Science associated with e-Science 11 Event-based systems: Opportunities and challenges at exascale, Proceedings of the Third ACM International Conference on Distributed Event-Based Systems, DEBS '09, pp.1-210, 2009.

N. Fabian, K. Moreland, D. Thompson, A. Bauer, P. Marion et al., The ParaView Coprocessing Library: A scalable, general purpose in situ visualization library, 2011 IEEE Symposium on Large Data Analysis and Visualization, pp.89-96, 2011.
DOI : 10.1109/LDAV.2011.6092322

M. Howison, A. Adelmann, E. W. Bethel, A. Gsell, B. Oswald et al., H5hut: A high-performance I/O library for particle-based simulations, 2010 IEEE International Conference On Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS), 2010.
DOI : 10.1109/CLUSTERWKSP.2010.5613098

T. Jin, F. Zhang, Q. Sun, H. Bui, M. Romanus et al., Exploring Data Staging Across Deep Memory Hierarchies for Coupled Data Intensive Simulation Workflows, 2015 IEEE International Parallel and Distributed Processing Symposium, 2015.
DOI : 10.1109/IPDPS.2015.50

M. Krone, J. E. Stone, T. Ertl, and K. Schulten, Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories, EuroVis 2012 Short Papers, 2012.

J. Lofstead and K. Schwan, Xchange: high performance data morphing in distributed applications, 2005.

W. E. Lorensen and H. E. Cline, Marching cubes: A high resolution 3d surface construction algorithm, Proceedings of the 14th Annual Conference on Computer Graphics and Interactive Techniques, SIGGRAPH '87, pp.163-169, 1987.

K. Moreland, $. Oh, and . Exascale, The Effect of Emerging Architectures on Scientific Discovery, High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion, pp.224-231, 2012.

. Morton, A computer oriented geodetic data base and a new technique in file sequencing, 1966.

T. Peterka, D. Morozov, and C. Phillips, High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation, SC14: International Conference for High Performance Computing, Networking, Storage and Analysis, 2014.
DOI : 10.1109/SC.2014.86

S. Pronk, S. Pall, R. Schulz, P. Larsson, P. Bjelkmar et al., GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit, Bioinformatics, vol.29, issue.7, pp.29845-854, 2013.
DOI : 10.1093/bioinformatics/btt055

W. Schroeder, K. Martin, and B. Lorensen, The Visualization Toolkit? An Object-Oriented Approach To 3D Graphics, 2006.

H. The and . Group, Hierarchical Data Format, 1997.

H. The and . Group, Parallel Hierarchical Data Format, 1997.

B. Whitlock, J. M. Favre, and J. S. Meredith, Parallel In Situ Coupling of Simulation with a Fully Featured Visualization System, Proceedings of the 11th Eurographics Conference on Parallel Graphics and Visualization, pp.101-109, 2011.

F. Zheng, H. Abbasi, C. Docan, J. Lofstead, Q. Liu et al., PreDatA – preparatory data analytics on peta-scale machines, 2010 IEEE International Symposium on Parallel & Distributed Processing (IPDPS), pp.1-12, 2010.
DOI : 10.1109/IPDPS.2010.5470454

F. Zheng, H. Yu, C. Hantas, M. Wolf, G. Eisenhauer et al., GoldRush, Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis on, SC '13, 2013.
DOI : 10.1145/2503210.2503279