C. Gosselin and J. Angeles, A Global Performance Index for the Kinematic Optimization of Robotic Manipulators, Journal of Mechanical Design, vol.113, issue.3, pp.220-226, 1991.
DOI : 10.1115/1.2912772

J. Merlet, Optimal design of robots, Robotics: Science and Systems I, 2005.
DOI : 10.15607/RSS.2005.I.041
URL : https://hal.archives-ouvertes.fr/inria-00000473

J. M. Mccarthy and L. Joskowitz, Kinematic synthesis, " in Formal Engineering Design Synthesis, 2001.

E. S. Rudnick-cohen, S. Azarm, and J. Herrmann, Multi-Objective Design and Path Planning Optimization of Unmanned Aerial Vehicles (UAVs), 16th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference, 2015.
DOI : 10.2514/6.2015-2322

L. E. Kavraki, P. Svestka, J. Latombe, and M. Overmars, Probabilistic roadmaps for path planning in high-dimensional configuration spaces, IEEE Transactions on Robotics and Automation, vol.12, issue.4, pp.566-580, 1996.
DOI : 10.1109/70.508439

S. M. Lavalle, Planning Algorithms, 2006.
DOI : 10.1017/CBO9780511546877

T. Siméon, J. Laumond, J. Cortés, and A. Sahbani, Manipulation Planning with Probabilistic Roadmaps, The International Journal of Robotics Research, vol.23, issue.7-8, pp.729-746, 2004.
DOI : 10.1177/0278364904045471

K. Hauser and J. Latombe, Multi-modal Motion Planning in Non-expansive Spaces, The International Journal of Robotics Research, vol.24, issue.5, pp.897-915, 2010.
DOI : 10.1177/0278364909352098

L. Jaillet, J. Cortés, and T. Siméon, Sampling-Based Path Planning on Configuration-Space Costmaps, IEEE Transactions on Robotics, vol.26, issue.4, pp.635-681, 2010.
DOI : 10.1109/TRO.2010.2049527

M. Moll, D. Schwarz, and L. E. Kavraki, Roadmap Methods for Protein Folding, 2007.

I. Al-bluwi, T. Siméon, and J. Cortés, Motion planning algorithms for molecular simulations: A survey, Computer Science Review, vol.6, issue.4, pp.125-168, 2012.
DOI : 10.1016/j.cosrev.2012.07.002

B. Gipson, D. Hsu, L. Kavraki, and J. Latombe, Computational Models of Protein Kinematics and Dynamics: Beyond Simulation, Annual Review of Analytical Chemistry, vol.5, issue.1, pp.273-91, 2012.
DOI : 10.1146/annurev-anchem-062011-143024

A. Shehu, Probabilistic search and optimization for protein energy landscapes, Handbook of Computational Molecular Biology, 2013.

A. E. Keating, Methods in protein design, ser. Methods in enzymology, 2013.

B. R. Donald, Algorithms in Structural Molecular Biology, 2011.

C. E. Tinberg, S. D. Khare, J. Dou, L. Doyle, J. W. Nelson et al., Computational design of ligand-binding proteins with high affinity and selectivity, Nature, vol.27, issue.7466, pp.212-218, 2013.
DOI : 10.1038/nature12443

P. R. Crowe, W. R. Johnson, and . Schief, Proof of principle for epitope-focused vaccine design, Nature, 2014.

D. Devaurs, T. Siméon, and J. Cortés, Optimal Path Planning in Complex Cost Spaces With Sampling-Based Algorithms, IEEE Transactions on Automation Science and Engineering, vol.13, issue.2, pp.415-424, 2015.
DOI : 10.1109/TASE.2015.2487881
URL : https://hal.archives-ouvertes.fr/hal-01231482

S. Lavalle and J. Kuffner, Rapidly-exploring random trees: progress and prospects, Algorithmic and Computational Robotics: New Directions, pp.293-308, 2001.

S. Karaman and E. Frazzoli, Sampling-based algorithms for optimal motion planning, The International Journal of Robotics Research, vol.23, issue.7, pp.846-894, 2011.
DOI : 10.1017/CBO9780511546877

L. Janson, E. Schmerling, A. Clark, and M. Pavone, Fast marching tree: A fast marching sampling-based method for optimal motion planning in many dimensions, The International Journal of Robotics Research, vol.20, issue.4, pp.883-921, 2015.
DOI : 10.1177/02783640122067453

D. Devaurs, T. Siméon, and J. Cortés, A multi-tree extension of the transitionbased RRT: Application to ordering-and-pathfinding problems in continuous cost spaces, IEEE/RSJ International Conference on Intelligent Robots and Systems, pp.2991-2996, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01057030

N. Metropolis, A. Rosenbluth, M. Rosenbluth, A. Teller, and E. Teller, Equation of State Calculations by Fast Computing Machines, The Journal of Chemical Physics, vol.21, issue.6, pp.1087-1092, 1953.
DOI : 10.1063/1.1699114

Y. Li, Z. Littlefield, and K. E. Bekris, Asymptotically optimal sampling-based kinodynamic planning, The International Journal of Robotics Research, vol.32, issue.9, pp.528-564, 2016.
DOI : 10.1145/174147.174150