Scaffolding pre-assembled contigs using SSPACE, Bioinformatics, vol.27, issue.4, pp.578-579, 2011. ,
DOI : 10.1093/bioinformatics/btq683
Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter, In: WABI. Lecture Notes in Computer Science, vol.7534, pp.236-248, 2012. ,
DOI : 10.1007/978-3-642-33122-0_19
URL : https://hal.archives-ouvertes.fr/hal-00753930
Computers and Intractability; A Guide to the Theory of NP-Completeness, 1990. ,
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies, Bioinformatics, vol.28, issue.11, pp.1429-1437, 2012. ,
DOI : 10.1093/bioinformatics/bts175
QUAST: quality assessment tool for genome assemblies, Bioinformatics, vol.29, issue.8, pp.29-1072, 2013. ,
DOI : 10.1093/bioinformatics/btt086
Gurobi optimizer reference manual version 3, 2010. ,
ART: a next-generation sequencing read simulator, Bioinformatics, vol.28, issue.4, pp.593-594, 2012. ,
DOI : 10.1093/bioinformatics/btr708
Inverted repeats in chloroplast DNA from higher plants, Proceedings of the National Academy of Sciences, vol.76, issue.1, pp.41-45, 1979. ,
DOI : 10.1073/pnas.76.1.41
Scaffmatch: scaffolding algorithm based on maximum weight matching, Bioinformatics, 2015. ,
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers, Journal of Computational Biology, vol.18, issue.11, pp.1625-1634, 2011. ,
DOI : 10.1089/cmb.2011.0151
An integer linear programming approach for genome scaffolding, Bioinformatics, 2015. ,
An Eulerian path approach to DNA fragment assembly, Proceedings of the National Academy of Sciences, vol.98, issue.17, pp.9748-9753, 2001. ,
DOI : 10.1073/pnas.171285098
BESST - Efficient scaffolding of large fragmented assemblies, BMC Bioinformatics, vol.15, issue.1, p.281, 2014. ,
DOI : 10.1186/1471-2105-15-281
Human whole-genome shotgunsequencing, Genome Research, vol.7, issue.5, pp.401-409, 1997. ,
Exact approaches for scaffolding, BMC Bioinformatics, vol.16, issue.Suppl 14, p.2, 2015. ,
DOI : 10.1186/1471-2105-16-S14-S2
URL : https://hal.archives-ouvertes.fr/lirmm-01219627