The General Purpose Analog Computer and Computable Analysis are Two Equivalent Paradigms of Analog Computation, International Conference on Theory and Applications of Models of Computation, pp.631-643, 2006. ,
DOI : 10.1007/11750321_60
URL : https://hal.archives-ouvertes.fr/inria-00102946
On the Computational Power of Brane Calculi, Transactions on Computational Systems Biology VI CMSB'05 Special Issue, pp.16-43, 2006. ,
DOI : 10.1007/11880646_2
Turing universality of the Biochemical Ground Form, Mathematical Structures in Computer Science, vol.3082, issue.01, pp.45-73, 2010. ,
DOI : 10.1007/s11047-008-9067-y
Modeling and querying biomolecular interaction networks, Modeling and querying biochemical interaction networks, pp.25-44, 2004. ,
DOI : 10.1016/j.tcs.2004.03.063
URL : http://doi.org/10.1016/j.tcs.2004.03.063
« Computer aided design of programmable synthetic protocells performing multiplexed logic-gated diagnostics at the micro-scale, 2018. ,
Detection of pathological biomarkers in human clinical samples via amplifying genetic switches and logic gates, Science Translational Medicine, vol.99, issue.4, 2015. ,
DOI : 10.1073/pnas.042521699
Abstract interpretation, Proceedings of the 4th ACM SIGACT-SIGPLAN symposium on Principles of programming languages , POPL '77, pp.238-252, 1977. ,
DOI : 10.1145/512950.512973
URL : https://hal.archives-ouvertes.fr/inria-00528590
Inferring reaction systems from ordinary differential equations, Theoretical Computer Science, vol.599, pp.64-78, 2015. ,
DOI : 10.1016/j.tcs.2014.07.032
URL : https://hal.archives-ouvertes.fr/hal-01103692
Abstract interpretation and types for systems biology, Theoretical Computer Science, pp.52-70, 2008. ,
DOI : 10.1016/j.tcs.2008.04.024
URL : https://hal.archives-ouvertes.fr/hal-01431355
From Reaction Models to Influence Graphs and Back: A Theorem, Proceedings of Formal Methods in Systems Biology FMSB'08, number 5054 in Lecture Notes in Computer Science, 2008. ,
DOI : 10.1007/978-3-540-68413-8_7
URL : https://hal.archives-ouvertes.fr/inria-00419921
Temporal Logic Modeling of Dynamical Behaviors: First-Order Patterns and Solvers, Logical Modeling of Biological Systems, pp.291-323, 2014. ,
DOI : 10.1002/9781119005223.ch8
URL : https://hal.archives-ouvertes.fr/hal-01103305
Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle, Proceedings of the National Academy of Sciences, pp.21643-21648, 2009. ,
DOI : 10.1073/pnas.94.17.9147
Exact stochastic simulation of coupled chemical reactions, The Journal of Physical Chemistry, vol.81, issue.25, pp.2340-2361, 1977. ,
DOI : 10.1021/j100540a008
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.458.4787
Analog computers and recursive functions over the reals, Journal of Complexity, vol.19, issue.5, pp.644-664, 2003. ,
DOI : 10.1016/S0885-064X(03)00034-7
Ultrasensitivity in the mitogen-activated protein kinase cascade., Proceedings of the National Academy of Sciences, pp.10078-10083, 1996. ,
DOI : 10.1073/pnas.93.19.10078
Biomolecular implementation of linear I/O systems, IET Systems Biology, vol.5, issue.4, pp.252-260, 2011. ,
DOI : 10.1049/iet-syb.2010.0056
Continuous models of computation : from computability to complexity, Ecole Polytechnique, 2015. ,
URL : https://hal.archives-ouvertes.fr/tel-01223284
Continuous valuations of temporal logic specifications with applications to parameter optimization and robustness measures, Theoretical Computer Science, vol.412, issue.26, pp.2827-2839, 2011. ,
DOI : 10.1016/j.tcs.2010.05.008
URL : https://hal.archives-ouvertes.fr/hal-01431314
Modeling dynamic phenomena in molecular and cellular biology, 1984. ,
Mathematical Theory of the Differential Analyzer, Journal of Mathematics and Physics, vol.XXII, issue.1-4, pp.337-354, 1941. ,
DOI : 10.1002/sapm1941201337
Necessary Conditions for Multistationarity and Stable Periodicity, Journal of Biological Systems, vol.06, issue.01, pp.3-9, 1998. ,
DOI : 10.1142/S0218339098000042
On the Relation Between the Logical Structure of Systems and Their Ability to Generate Multiple Steady States or Sustained Oscillations, pp.180-193, 1981. ,
DOI : 10.1007/978-3-642-81703-8_24
Probably Approximately Correct, Basic Books, 2013. ,