Energy landscapes and persistent minima, The Journal of Chemical Physics, vol.144, issue.5, p.2016 ,
DOI : 10.1063/1.4941052
URL : https://hal.archives-ouvertes.fr/hal-01423280
The structural bioinformatics library: modeling in biomolecular science and beyond, Bioinformatics, p.2016 ,
DOI : 10.1093/bioinformatics/btw752
URL : https://hal.archives-ouvertes.fr/hal-01379635
Conformational ensembles and sampled energy landscapes: Analysis and comparison, Journal of Computational Chemistry, vol.32, issue.16, pp.1213-1231, 2015. ,
DOI : 10.1002/jcc.23913
URL : https://hal.archives-ouvertes.fr/hal-01076317
Persistence-Based Clustering in Riemannian Manifolds, Journal of the ACM, vol.60, issue.6, pp.1-38, 2013. ,
DOI : 10.1145/2535927
URL : https://hal.archives-ouvertes.fr/hal-01094872
Mean shift, mode seeking, and clustering, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.17, issue.8, pp.790-799, 1995. ,
DOI : 10.1109/34.400568
Application of the simplex method to a transportation problem Activity Analysis of Production and Allocation, pp.359-373, 1951. ,
Computers and Intractability: A Guide to the Theory of NP-Completeness, 1979. ,
Stochastic optimization for large-scale optimal transport, Proc. NIPS'16, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01321664
Introduction to mathematical programming, 1977. ,
Randomized tree construction algorithm to explore energy landscapes, Journal of Computational Chemistry, vol.319, issue.16, pp.3464-3474, 2011. ,
DOI : 10.1002/jcc.21931
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.589.7111
The Earth Mover's distance is the Mallows distance: some insights from statistics, Proceedings Eighth IEEE International Conference on Computer Vision. ICCV 2001, pp.251-256, 2001. ,
DOI : 10.1109/ICCV.2001.937632
Mémoire sur la théorie des déblais et des remblais, Histoire de l'Académie Royale des Sciences de Paris, pp.666-704 ,
Energy Landscape and Global Optimization for a Frustrated Model Protein, The Journal of Physical Chemistry B, vol.115, issue.39, pp.11525-11529, 2011. ,
DOI : 10.1021/jp207246m
URL : http://doi.org/10.1021/jp207246m
Hybridizing rapidly exploring random trees and basin hopping yields an improved exploration of energy landscapes, Journal of Computational Chemistry, vol.124, issue.8, pp.739-752, 2016. ,
DOI : 10.1002/jcc.24256
URL : https://hal.archives-ouvertes.fr/hal-01497994
The earth mover's distance as a metric for image retrieval, International Journal of Computer Vision, vol.40, issue.2, pp.99-121, 2000. ,
DOI : 10.1023/A:1026543900054
Convolutional wasserstein distances, ACM Transactions on Graphics, vol.34, issue.4, p.66, 2015. ,
DOI : 10.1145/2766963
URL : https://hal.archives-ouvertes.fr/hal-01188953
Topics in optimal transportation. Number 58, 2003. ,
Energy Landscapes, 2003. ,
DOI : 10.1017/CBO9780511721724
URL : https://hal.archives-ouvertes.fr/hal-01423280