??-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm, Structure, vol.23, issue.12, 2015. ,
DOI : 10.1016/j.str.2015.10.013
Inferential Optimization for Simultaneous Fitting of Multiple Components into a CryoEM Map of Their Assembly, Journal of Molecular Biology, vol.388, issue.1, 2009. ,
DOI : 10.1016/j.jmb.2009.02.031
Convex Optimization, 2004. ,
Relaxations and randomized methods for nonconvex qcqps, EE392o Class Notes, 2003. ,
Numerical optimization , second edition. Numerical optimization, pp.497-528, 2006. ,
Adaptive simulated annealing (asa): Lessons learned, Control and Cybernetics, vol.25, issue.1, pp.32-54, 1996. ,
Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta, Journal of Molecular Biology, vol.392, issue.1, pp.181-190, 2009. ,
DOI : 10.1016/j.jmb.2009.07.008
Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps, Journal of Structural Biology, vol.177, issue.2, pp.520-531, 2012. ,
DOI : 10.1016/j.jsb.2011.10.011
Protein Structure Fitting and Refinement Guided by Cryo-EM Density, Structure, vol.16, issue.2, pp.295-307, 2008. ,
DOI : 10.1016/j.str.2007.11.016
URL : http://doi.org/10.1016/j.str.2007.11.016
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps, Bioinformatics, vol.26, issue.12, pp.261-268, 2010. ,
DOI : 10.1093/bioinformatics/btq201
Scoring functions for cryoEM density fitting, Journal of Structural Biology, vol.174, issue.2, pp.333-343, 2011. ,
DOI : 10.1016/j.jsb.2011.01.012
Multi-resolution contour-based fitting of macromolecular structures, Journal of Molecular Biology, vol.317, issue.3, pp.375-384, 2002. ,
DOI : 10.1006/jmbi.2002.5438
United States. MATLAB and Optimization Toolbox, Global Optimization Toolbox Release, 2015. ,
Significance of Root-Mean-Square Deviation in Comparing Three-dimensional Structures of Globular Proteins, Journal of Molecular Biology, vol.235, issue.2, pp.625-634, 1994. ,
DOI : 10.1006/jmbi.1994.1017
Crystal Structure of the Productive Ternary Complex of Dihydropyrimidine Dehydrogenase with NADPH and 5-Iodouracil: IMPLICATIONS FOR MECHANISM OF INHIBITION AND ELECTRON TRANSFER, Journal of Biological Chemistry, vol.277, issue.15, p.13155, 2002. ,
DOI : 10.1074/jbc.M111877200
Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation, Journal of Molecular Biology, vol.303, issue.2, p.329, 2000. ,
DOI : 10.1006/jmbi.2000.4136
Crystal structures of actin-related protein 2/3 complex with bound ATP or ADP, Proc.Natl.Acad.Sci.Usa, pp.15627-15632, 2004. ,
DOI : 10.1073/pnas.0407149101
Insights into E3 ligase activity revealed by a SUMO???RanGAP1???Ubc9???Nup358 complex, Nature, vol.250, issue.7042, pp.687-692, 2005. ,
DOI : 10.1146/ANNUREV.BIOCHEM.70.1.503
The beginning of kinesin's force-generating cycle visualized at 9-?? resolution, The Journal of Cell Biology, vol.9, issue.3, pp.377-385, 2007. ,
DOI : 10.1093/emboj/20.11.2611
A Bipolar Spindle of Antiparallel ParM Filaments Drives Bacterial Plasmid Segregation, Science, vol.338, issue.6112, pp.338-1334, 2012. ,
DOI : 10.1126/science.1229091
Large Terminase Conformational Change Induced by Connector Binding in Bacteriophage T7, Journal of Biological Chemistry, vol.288, issue.23, pp.288-16998, 2013. ,
DOI : 10.1074/jbc.M112.448951