M. Carlier, Actin-based Motility, 2010.
DOI : 10.1007/978-90-481-9301-1

URL : https://hal.archives-ouvertes.fr/hal-01461948

P. K. Mattila and P. Lappalainen, Filopodia: molecular architecture and cellular functions, Nature Reviews Molecular Cell Biology, vol.19, issue.6, pp.446-454, 2008.
DOI : 10.1038/nrm2406

C. Ortiz-de-solórzano, A. Muñoz-barrutia, E. Meijering, and M. Kozubek, Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling, IEEE Signal Processing Magazine, vol.32, issue.1, pp.20-29, 2015.
DOI : 10.1109/MSP.2014.2358263

A. Cardona and P. Tomancak, Current challenges in open-source bioimage informatics, Nature Methods, vol.9, issue.7, pp.661-665, 2012.
DOI : 10.1038/nmeth.2082

A. E. Carpenter, L. Kamentsky, and K. W. Eliceiri, A call for bioimaging software usability, Nature Methods, vol.9, issue.7, pp.666-670, 2012.
DOI : 10.1038/nmeth.2073

D. L. Coutu and T. Schroeder, Probing cellular processes by long-term live imaging - historic problems and current solutions, Journal of Cell Science, vol.126, issue.17, pp.3805-3815, 2013.
DOI : 10.1242/jcs.118349

N. Chenouard, I. Smal, F. De-chaumont, and M. Ma?ka, Objective comparison of particle tracking methods, Nature Methods, vol.6362, issue.3, pp.281-289, 2014.
DOI : 10.1038/nmeth.2019

URL : https://hal.archives-ouvertes.fr/hal-00932869

M. Ma?ka, V. Ulman, and D. Svoboda, A benchmark for comparison of cell tracking algorithms, Bioinformatics, vol.30, issue.11, pp.1609-1617, 2014.

D. Svoboda and V. Ulman, MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy, IEEE Transactions on Medical Imaging, vol.36, issue.1, pp.310-321, 2017.
DOI : 10.1109/TMI.2016.2606545

D. Tsygankov, C. G. Bilancia, E. A. Vitriol, K. M. Hahn, M. Peifer et al., CellGeo: A computational platform for the analysis of shape changes in cells with complex geometries, The Journal of Cell Biology, vol.17, issue.3, pp.443-460, 2014.
DOI : 10.1038/ncb895

D. J. Barry, C. H. Durkin, J. V. Abella, and M. Way, Open source software for quantification of cell migration, protrusions, and fluorescence intensities, The Journal of Cell Biology, vol.209, issue.1, pp.163-180, 2015.
DOI : 10.1083/jcb.201501081.dv

Y. Lan and G. A. Papoian, The Stochastic Dynamics of Filopodial Growth, Biophysical Journal, vol.94, issue.10, pp.3839-3852, 2008.
DOI : 10.1529/biophysj.107.123778

R. Erban, J. S. Chapman14-]-r, J. S. Erban, P. Chapman, and . Maini, Reactive boundary conditions for stochastic simulations of reaction?diffusion processes A practical guide to stochastic simulations of reaction-diffusion processes, Physical Biology, vol.4, issue.1, p.160704, 1908.

C. A. Felippa, A systematic approach to the element independent corotational dynamics of finite elements, 2000.

D. Svoboda, V. Ulman, and I. Peterlík, On proper simulation of chromatin structure in static images as well as in time-lapse sequences in fluorescence microscopy, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), pp.712-716, 2015.
DOI : 10.1109/ISBI.2015.7163972

J. S. Przemieniecki, MATRIX STRUCTURAL ANALYSIS OF SUBSTRUCTURES, AIAA Journal, vol.1, issue.1, pp.138-147, 1963.
DOI : 10.2514/3.1483

I. Peterlík, C. Duriez, and S. Cotin, Modeling and realtime simulation of a vascularized liver tissue, Int. Conf. MICCAI, 2012, pp.50-57

S. Cotin, C. Duriez, J. Lenoir, P. Neumann, and S. Dawson, New Approaches to Catheter Navigation for Interventional Radiology Simulation, Int. Conf. MICCAI, pp.534-542, 2005.
DOI : 10.1007/11566489_66

URL : https://hal.archives-ouvertes.fr/hal-01386225

D. Svoboda, M. Kozubek, and S. Stejskal, Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry, Cytometry Part A, vol.32, issue.6, pp.494-509, 2009.
DOI : 10.1002/cyto.a.20714

M. Ma?ka, X. Morales, A. Muñoz-barrutia, A. Rouzaut, and C. Ortiz-de-solórzano, Automatic quantification of filopodia-based cell migration, IEEE Int, pp.668-671, 2013.