S. Nik-zainal, A compendium of 560 breast cancer genomes, Nature, 2016.

F. W. Huang, Highly Recurrent TERT Promoter Mutations in Human Melanoma, Science, vol.38, issue.5, pp.957-966, 2013.
DOI : 10.1038/ng1777

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423787

J. Vinagre, Frequency of TERT promoter mutations in human cancers, Nature Communications, vol.30, p.2185, 2013.
DOI : 10.1038/onc.2010.512

X. S. Puente, Non-coding recurrent mutations in chronic lymphocytic leukaemia, Nature, vol.29, issue.7574, pp.519-543, 2015.
DOI : 10.2307/2529177

URL : https://digital.csic.es/bitstream/10261/135722/1/accesoRestringido.pdf

L. B. Alexandrov, Signatures of mutational processes in human cancer, Nature, vol.27, issue.7463, pp.415-436, 2013.
DOI : 10.1093/bioinformatics/btr354

A. Mehta and J. Haber, Sources of DNA Double-Strand Breaks and Models of Recombinational DNA Repair, Cold Spring Harbor Perspectives in Biology, vol.6, issue.9, p.16428, 2014.
DOI : 10.1101/cshperspect.a016428

R. Ceccaldi, B. Rondinelli, and A. D. Andrea, Repair Pathway Choices and Consequences at the Double-Strand Break, Trends in Cell Biology, vol.26, issue.1, pp.52-64, 2016.
DOI : 10.1016/j.tcb.2015.07.009

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862604

T. Helleday, S. Eshtad, and S. Nik-zainal, Mechanisms underlying mutational signatures in human cancers, Nature Reviews Genetics, vol.96, issue.9, pp.585-98, 2014.
DOI : 10.1038/nrc2998

S. Nik-zainal, Mutational Processes Molding the Genomes of 21 Breast Cancers, Cell, vol.149, issue.5, pp.979-93, 2012.
DOI : 10.1016/j.cell.2012.04.024

B. Nilsson, M. Johansson, A. Heyden, S. Nelander, and T. Fioretos, An improved method for detecting and delineating genomic regions with altered gene expression in cancer, Genome Biology, vol.9, issue.1, p.13, 2008.
DOI : 10.1186/gb-2008-9-1-r13

G. Nilsen, Copynumber: Efficient algorithms for single- and multi-track copy number segmentation, BMC Genomics, vol.13, issue.1, p.591, 2012.
DOI : 10.1093/bioinformatics/btn067

URL : http://doi.org/10.1186/1471-2164-13-591

F. Menghi, The tandem duplicator phenotype as a distinct genomic configuration in cancer, Proceedings of the National Academy of Sciences, vol.2014, issue.7, pp.2373-82, 2016.
DOI : 10.1126/scisignal.2004088

M. Garcia-closas, Genome-wide association studies identify four ER negative?specific breast cancer risk loci, Nature Genetics, vol.9, issue.4, pp.392-400, 2013.
DOI : 10.1093/nar/gks542

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3771695

D. F. Easton, Genome-wide association study identifies novel breast cancer susceptibility loci, Nature, vol.70, issue.7148, pp.1087-93, 2007.
DOI : 10.1038/nature05887

S. Li, Endocrine-Therapy-Resistant ESR1 Variants Revealed by Genomic Characterization of Breast-Cancer-Derived Xenografts, Cell Reports, vol.4, issue.6, pp.1116-1146, 2013.
DOI : 10.1016/j.celrep.2013.08.022

D. R. Robinson, Activating ESR1 mutations in hormone-resistant metastatic breast cancer, Nature Genetics, vol.13, issue.12, pp.1446-51, 2013.
DOI : 10.1593/neo.111252

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009946

L. Soucek, Modelling Myc inhibition as a cancer therapy, Nature, vol.10, issue.7213, pp.679-83, 2008.
DOI : 10.1038/nature07260

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485609

J. Shi, Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation, Genes & Development, vol.27, issue.24, pp.2648-62, 2013.
DOI : 10.1101/gad.232710.113

X. Zhang, Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers, Nature Genetics, vol.511, issue.2, pp.176-82, 2016.
DOI : 10.1038/nmeth.3047

L. Costantino, Break-Induced Replication Repair of Damaged Forks Induces Genomic Duplications in Human Cells, Science, vol.12, issue.6166, pp.88-91, 2014.
DOI : 10.1371/journal.pgen.1003192

N. A. Willis, E. Rass, and R. Scully, Deciphering the Code of the Cancer Genome: Mechanisms of Chromosome Rearrangement, Trends in Cancer, vol.1, issue.4, pp.217-230, 2015.
DOI : 10.1016/j.trecan.2015.10.007

N. Saini, Migrating bubble during break-induced replication drives conservative DNA synthesis, Nature, vol.18, issue.7471, pp.389-92, 2013.
DOI : 10.1214/aoms/1177730491

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3804423

C. A. Sloan, ENCODE data at the ENCODE portal, Nucleic Acids Research, vol.44, issue.D1, pp.726-758, 2016.
DOI : 10.1093/nar/gkv1160

URL : http://doi.org/10.1093/nar/gkv1160

F. Castro-giner, P. Ratcliffe, and I. Tomlinson, The mini-driver model of polygenic cancer evolution, Nature Reviews Cancer, vol.1805, issue.11, pp.680-685, 2015.
DOI : 10.1093/jnci/dju402

A. Roy, Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney, Nature Communications, vol.7, p.8891, 2015.
DOI : 10.1371/journal.pcbi.1001138