F. Bassino, J. Clément, J. Fayolle, and P. Nicodème, Constructions for clumps statistics, p.3671, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00452701

V. Boeva, J. Clment, M. Rgnier, and M. Vandenbogaert, Assessing the Significance of Sets of Words, Lecture Notes in Computer Science, vol.3537, pp.358-370, 2005.
DOI : 10.1007/11496656_31

M. Crochemore, C. Hancart, and T. Lecroq, Algorithms on Strings, p.392, 2007.
DOI : 10.1017/CBO9780511546853

URL : https://hal.archives-ouvertes.fr/hal-00470109

M. Crochemore, C. S. Iliopoulos, R. Kundu, M. Mohamed, and F. Vayani, Linear algorithm for conservative degenerate pattern matching, Engineering Applications of Artificial Intelligence, vol.51, pp.109-114, 2016.
DOI : 10.1016/j.engappai.2016.01.009

URL : http://arxiv.org/abs/1506.04559

M. Crochemore and W. Rytter, Text Algorithms, 1994.
URL : https://hal.archives-ouvertes.fr/hal-00619796

I. Kvietikova, R. H. Wenger, H. H. Marti, and M. Gassmann, The transcription factors ATF-1 and CREB-1 bind constitutively to the hypoxia-inducible factor-1 (HIF-1)DNA recognition site, Nucleic Acids Research, vol.23, issue.22, pp.4542-4550, 1995.
DOI : 10.1093/nar/23.22.4542

G. M. Landau and U. Vishkin, Fast parallel and serial approximate string matching, Journal of Algorithms, vol.10, issue.2, pp.157-169, 1989.
DOI : 10.1016/0196-6774(89)90010-2

E. M. Mccreight, A Space-Economical Suffix Tree Construction Algorithm, Journal of the ACM, vol.23, issue.2, pp.262-272, 1976.
DOI : 10.1145/321941.321946

M. S. Rahman, C. S. Iliopoulos, J. Van-leeuwen, G. F. Italiano, W. Van-der-hoek et al., Pattern matching algorithms with don't cares, Proceedings of the 33rd International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM07), pp.116-126, 2007.

M. Régnier, A unified approach to word statistics, Proceedings of the second annual international conference on Computational molecular biology , RECOMB '98, pp.207-213, 1998.
DOI : 10.1145/279069.279116

E. Ukkonen, On-line construction of suffix trees, Algorithmica, vol.10, issue.3, pp.249-260, 1995.
DOI : 10.1145/321941.321946

P. Weiner, Linear pattern matching algorithms, 14th Annual Symposium on Switching and Automata Theory (swat 1973), pp.1-11, 1973.
DOI : 10.1109/SWAT.1973.13

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.474.9582