Estimation with applications to tracking and navigation: theory algorithms and software Multiple objects tracking in fluorescence microscopy, J. Math. Biol, vol.583, issue.12, pp.57-80, 2001. ,
DOI : 10.1002/0471221279
Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association Feature point tracking and trajectory analysis for video imaging in cell biology Multiple Hypothesis Tracking for Cluttered Biological Image Sequences A Novel Multiple Hypothesis Based Particle Tracking Method for Clathrin Mediated Endocytosis Analysis Using Fluorescence Microscopy Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy, Nat. Methods IEEE Trans. Med. Imaging J. Struct. Biol. IEEE Trans. Pattern Anal. Mach. Intell. IEEE Trans. Image Process. Med. Image Anal, vol.5, issue.24 1, pp.695-702, 2005. ,
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association, IEEE Transactions on Image Processing, vol.24, issue.11, pp.4122-4136, 2015. ,
DOI : 10.1109/TIP.2015.2458174
Multiple-Target Tracking of 3D Fluorescent Objects Based on Simulated Annealing, 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006., pp.1020-1023, 2006. ,
DOI : 10.1109/ISBI.2006.1625094
Tracking of non-brownian particles using the Viterbi algorithm, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), pp.380-384, 2015. ,
DOI : 10.1109/ISBI.2015.7163892
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots, IEEE Transactions on Image Processing, vol.15, issue.5, pp.1062-1070, 2006. ,
DOI : 10.1109/TIP.2006.872323
Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis, IEEE Transactions on Medical Imaging, vol.27, issue.6, pp.789-804, 2008. ,
DOI : 10.1109/TMI.2008.916964
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences, Medical Image Analysis, vol.13, issue.2, pp.325-342, 2009. ,
DOI : 10.1016/j.media.2008.12.004
Multiple dense particle tracking in fluorescence microscopy images based on multidimensional assignment???, Journal of Structural Biology, vol.173, issue.2, pp.219-228, 2011. ,
DOI : 10.1016/j.jsb.2010.11.001
Application of the IMM-JPDA Filter to Multiple Target Tracking in Total Internal Reflection Fluorescence Microscopy Images, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp.357-364, 2012. ,
DOI : 10.1007/978-3-642-33415-3_44
A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp.264-267, 2008. ,
DOI : 10.1109/ISBI.2008.4540983
Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences, IEEE Transactions on Medical Imaging, vol.34, issue.6, pp.1336-1348, 2015. ,
DOI : 10.1109/TMI.2015.2390647
Single-particle tracking: models of directed transport, Biophysical Journal, vol.67, issue.5, pp.2110-2119, 1994. ,
DOI : 10.1016/S0006-3495(94)80694-0
Axonal Transport of Neurofilaments: A Single Population of Intermittently Moving Polymers, Journal of Neuroscience, vol.32, issue.2, pp.746-758, 2012. ,
DOI : 10.1523/JNEUROSCI.4926-11.2012
Physical principles and models describing intracellular virus particle dynamics, Current Opinion in Microbiology, vol.12, issue.4, pp.439-445, 2009. ,
DOI : 10.1016/j.mib.2009.06.015
Rapid Movements of Vimentin on Microtubule Tracks: Kinesin-dependent Assembly of Intermediate Filament Networks, The Journal of Cell Biology, vol.110, issue.1, pp.159-170, 1998. ,
DOI : 10.1083/jcb.143.1.147
A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells, Journal of Structural Biology, vol.159, issue.3, pp.347-358, 2007. ,
DOI : 10.1016/j.jsb.2007.04.003
An algorithm for piecewiseconstant velocity estimation and application to particle trajectories in microscopy, Proc. Int. Symp. on Biomedical Imaging (ISBI), pp.399-402, 2015. ,
Motion analysis of receptors and ligands in high resolution fluorescence microscopy images, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), pp.703-706, 2015. ,
DOI : 10.1109/ISBI.2015.7163970
An adaptive statistical test to detect non Brownian diffusion from particle trajectories, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), pp.972-975, 2016. ,
DOI : 10.1109/ISBI.2016.7493427
URL : https://hal.archives-ouvertes.fr/hal-01416812
Objective comparison of particle tracking methods, Nature Methods, vol.6362, issue.3, pp.281-289, 2014. ,
DOI : 10.1038/nmeth.2019
URL : https://hal.archives-ouvertes.fr/hal-00932869
Intracellular objects tracking, European Journal of Cell Biology, vol.86, issue.9, pp.569-578, 2007. ,
DOI : 10.1016/j.ejcb.2007.05.005
Methods for Cell and Particle Tracking, Methods Enzym, vol.504, issue.9, pp.183-200, 2012. ,
DOI : 10.1016/B978-0-12-391857-4.00009-4
Automatic fluorescent tag localization II: improvement in super-resolution by relative tracking, Journal of Microscopy, vol.208, issue.3, pp.230-248, 2003. ,
DOI : 10.1007/978-3-662-02544-4
Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles, Biophysical Journal, vol.81, issue.4, pp.2378-2388, 2001. ,
DOI : 10.1016/S0006-3495(01)75884-5
Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy, IEEE Transactions on Medical Imaging, vol.29, issue.2, pp.282-301, 2010. ,
DOI : 10.1109/TMI.2009.2025127
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy, IEEE Journal of Selected Topics in Signal Processing, vol.10, issue.1, pp.6-30, 2016. ,
DOI : 10.1109/JSTSP.2015.2505402
URL : https://hal.archives-ouvertes.fr/hal-01246375
A New Approach to Linear Filtering and Prediction Problems, Journal of Basic Engineering, vol.82, issue.1, pp.35-45, 1960. ,
DOI : 10.1115/1.3662552
Tracking of multiple fluorescent biological objects in three dimensional video microscopy, Proceedings 2003 International Conference on Image Processing (Cat. No.03CH37429), p.1105, 2003. ,
DOI : 10.1109/ICIP.2003.1247160
Analysis of moving biological objects in video microscopy sequences, Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, pp.4-12, 1999. ,
The interacting multiple model algorithm for systems with Markovian switching coefficients, IEEE Transactions on Automatic Control, vol.33, issue.8, pp.780-783, 1988. ,
DOI : 10.1109/9.1299
On state estimation in switching environments, IEEE Transactions on Automatic Control, vol.15, issue.1, pp.10-17, 1970. ,
DOI : 10.1109/TAC.1970.1099359
Detection and estimation for abruptly changing systems, Automatica, vol.18, issue.5, pp.607-615, 1982. ,
DOI : 10.1016/0005-1098(82)90012-7
A tutorial on particle filters for online nonlinear/non-Gaussian Bayesian tracking, IEEE Transactions on Signal Processing, vol.50, issue.2, pp.174-188, 2002. ,
DOI : 10.1109/78.978374
Tracking Growing Axons by Particle Filtering in 3D???+???t Fluorescent Two-Photon Microscopy Images, Computer Vision ? ACCV 2012, pp.272-283, 2013. ,
DOI : 10.1007/978-3-642-37431-9_21
URL : https://hal.archives-ouvertes.fr/hal-00740966
Axonal transport analysis using Multitemporal Association Tracking, International Journal of Computational Biology and Drug Design, vol.5, issue.1, pp.35-48, 2012. ,
DOI : 10.1504/IJCBDD.2012.045950
A multiple target approach for single quantum dot tracking, 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821), pp.664-667, 2004. ,
DOI : 10.1109/ISBI.2004.1398625
URL : https://hal.archives-ouvertes.fr/hal-00002448
A batch algorithm using iterative application of the Viterbi algorithm to track cells and construct cell lineages, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), pp.382-385, 2012. ,
DOI : 10.1109/ISBI.2012.6235564
Non-Gaussian State-Space Modeling of Nonstationary Time Series, J. Am. Stat. Assoc, vol.82, issue.400, pp.1032-1041, 1987. ,
Maximum likelihood estimates of linear dynamic systems, AIAA Journal, vol.3, issue.8, pp.1445-1450, 1965. ,
DOI : 10.2514/3.2953
The optimum linear smoother as a combination of two optimum linear filters, IEEE Transactions on Automatic Control, vol.14, issue.4, pp.387-390, 1969. ,
DOI : 10.1109/TAC.1969.1099196
The two-filter formula for smoothing and an implementation of the Gaussian-sum smoother, Annals of the Institute of Statistical Mathematics, vol.81, issue.6/7, pp.605-623, 1994. ,
DOI : 10.1007/978-1-4757-9365-9
Smoothing algorithms for state???space models, Annals of the Institute of Statistical Mathematics, vol.4, issue.4, pp.61-89, 2009. ,
DOI : 10.1007/978-1-4757-3437-9_9
Ein Algorithmus mit k??rzesten alternierenden Wegen f??r dichte und d??nne Zuordnungsprobleme, Computing, vol.1, issue.4, pp.325-340, 1987. ,
DOI : 10.1007/978-3-642-51576-7_1
Advances in Analysis of Low Signal-to-Noise Images Link Dynamin and AP2 to the Functions of an Endocytic Checkpoint, Developmental Cell, vol.26, issue.3, pp.279-291, 2013. ,
DOI : 10.1016/j.devcel.2013.06.019
Intermediate filaments are dynamic and motile elements of cellular architecture, Journal of Cell Science, vol.117, issue.2, pp.133-141, 2004. ,
DOI : 10.1242/jcs.00936
Drifting Motions of the Adenovirus Receptor CAR and Immobile Integrins Initiate Virus Uncoating and Membrane Lytic Protein Exposure, Cell Host & Microbe, vol.10, issue.2, pp.105-117, 2011. ,
DOI : 10.1016/j.chom.2011.07.006
The Dynactin Complex Enhances the Speed of Microtubule-Dependent Motions of Adenovirus Both Towards and Away from the Nucleus, Viruses, vol.3, issue.12, pp.233-253, 2011. ,
DOI : 10.3390/v3030233
Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, vol.9, issue.7, pp.690-696, 2012. ,
DOI : 10.1038/nmeth.1924